Results 61 - 80 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9234 | 5' | -55.1 | NC_002512.2 | + | 81808 | 0.69 | 0.903742 |
Target: 5'- -----cGCCGgGGGACg-GACGACCg -3' miRNA: 3'- gaagaaCGGCgUCCUGagCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 124857 | 0.69 | 0.903742 |
Target: 5'- uUUC-UGCuacaugaccugCGCGGGGCUCGACGcGCCc -3' miRNA: 3'- gAAGaACG-----------GCGUCCUGAGCUGC-UGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 90655 | 0.69 | 0.903742 |
Target: 5'- -----gGCCGCGgucucGGAgUCGGCGGCCg -3' miRNA: 3'- gaagaaCGGCGU-----CCUgAGCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 75090 | 0.69 | 0.897496 |
Target: 5'- -----cGCCGUuucgGGGGCUCGACGucGCCg -3' miRNA: 3'- gaagaaCGGCG----UCCUGAGCUGC--UGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 167749 | 0.69 | 0.89103 |
Target: 5'- -----aGCUGCcGGGCgUCGGCGACCg -3' miRNA: 3'- gaagaaCGGCGuCCUG-AGCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 59479 | 0.69 | 0.884346 |
Target: 5'- --cCUcGCCaGCGGGuCUCGAgCGGCCUg -3' miRNA: 3'- gaaGAaCGG-CGUCCuGAGCU-GCUGGA- -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 213283 | 0.7 | 0.855516 |
Target: 5'- gCUUCaucaGCCGCGuGGC-CGACGACCUc -3' miRNA: 3'- -GAAGaa--CGGCGUcCUGaGCUGCUGGA- -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 103309 | 0.7 | 0.855516 |
Target: 5'- -----cGUCGUAGGACagGACGGCCg -3' miRNA: 3'- gaagaaCGGCGUCCUGagCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 44309 | 0.7 | 0.839918 |
Target: 5'- gUUCUgcaugcUGCCGUuccAGGucccCUCGACGGCCa -3' miRNA: 3'- gAAGA------ACGGCG---UCCu---GAGCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 118608 | 0.7 | 0.831844 |
Target: 5'- -gUCUgGCCGCGGGACgUCGAC-AUCa -3' miRNA: 3'- gaAGAaCGGCGUCCUG-AGCUGcUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 92228 | 0.71 | 0.823597 |
Target: 5'- gUUCgUGCCcgacgacCGGGACUCGgACGACCg -3' miRNA: 3'- gAAGaACGGc------GUCCUGAGC-UGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 13658 | 0.71 | 0.823597 |
Target: 5'- -gUCUcGCCGCGgcuccagcucccGGACgaggCGACGGCCg -3' miRNA: 3'- gaAGAaCGGCGU------------CCUGa---GCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 19356 | 0.71 | 0.815182 |
Target: 5'- ----aUGCCGgaccgucgGGGGCUCGGCGGCCUc -3' miRNA: 3'- gaagaACGGCg-------UCCUGAGCUGCUGGA- -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 96227 | 0.71 | 0.806609 |
Target: 5'- -----gGCCGCGGcGGCggCGGCGACCg -3' miRNA: 3'- gaagaaCGGCGUC-CUGa-GCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 48213 | 0.71 | 0.789016 |
Target: 5'- -aUCccgGCCGCGGGGCgCGACuACCUg -3' miRNA: 3'- gaAGaa-CGGCGUCCUGaGCUGcUGGA- -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 17780 | 0.72 | 0.780013 |
Target: 5'- gCUUCUcGCCGUGGaACUCGGCGAgCa -3' miRNA: 3'- -GAAGAaCGGCGUCcUGAGCUGCUgGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 149227 | 0.72 | 0.761634 |
Target: 5'- -----cGCCGCGGGAC-CGACgGACCc -3' miRNA: 3'- gaagaaCGGCGUCCUGaGCUG-CUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 106165 | 0.72 | 0.752275 |
Target: 5'- -gUCUUGCCGUAGG-CguaCGGCGACg- -3' miRNA: 3'- gaAGAACGGCGUCCuGa--GCUGCUGga -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 146739 | 0.72 | 0.742815 |
Target: 5'- -----gGCCGCcGGGCcCGACGACCUc -3' miRNA: 3'- gaagaaCGGCGuCCUGaGCUGCUGGA- -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 72880 | 0.73 | 0.694298 |
Target: 5'- ---gUUGUCGCGGGGCUCGggcccgaagcgGCGGCCg -3' miRNA: 3'- gaagAACGGCGUCCUGAGC-----------UGCUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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