miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9234 5' -55.1 NC_002512.2 + 101459 0.67 0.945539
Target:  5'- -----gGCCGCccgcgaggAGGGCUcCGGCGACCc -3'
miRNA:   3'- gaagaaCGGCG--------UCCUGA-GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 176763 0.67 0.945539
Target:  5'- gCUUCggacGCCuGCAGGGCUCGG-GACa- -3'
miRNA:   3'- -GAAGaa--CGG-CGUCCUGAGCUgCUGga -5'
9234 5' -55.1 NC_002512.2 + 35311 0.67 0.945539
Target:  5'- gCUUCuUUGCuaCGCGacGGACaCGGCGACCg -3'
miRNA:   3'- -GAAG-AACG--GCGU--CCUGaGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 145249 0.67 0.941112
Target:  5'- aCUUCcuggGCCGCcgccuGGA--CGACGACCUg -3'
miRNA:   3'- -GAAGaa--CGGCGu----CCUgaGCUGCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 142023 0.67 0.941112
Target:  5'- uCUUCcgcgGCCG-GGGGC-CGGCGACCc -3'
miRNA:   3'- -GAAGaa--CGGCgUCCUGaGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 117007 0.67 0.940657
Target:  5'- -----cGCaCGCAGGGCgggcgcaagaucaUCGGCGGCCg -3'
miRNA:   3'- gaagaaCG-GCGUCCUG-------------AGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 54257 0.67 0.940657
Target:  5'- -----aGCgGCAGGGCggcggcgUCGGCGACCc -3'
miRNA:   3'- gaagaaCGgCGUCCUG-------AGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 105042 0.68 0.936458
Target:  5'- --cCUcGUCGCGGGccucGCUCGGCGACg- -3'
miRNA:   3'- gaaGAaCGGCGUCC----UGAGCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 101698 0.68 0.936458
Target:  5'- -gUCccGCCgGCGGcccGCUCGGCGACCUc -3'
miRNA:   3'- gaAGaaCGG-CGUCc--UGAGCUGCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 119358 0.68 0.936458
Target:  5'- cCUUCUccGcCCGCGGGAUgguggacgacgCGGCGGCCc -3'
miRNA:   3'- -GAAGAa-C-GGCGUCCUGa----------GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 188634 0.68 0.931576
Target:  5'- -cUCggGCCGCaAGGGCgccggcggcggCGGCGGCCc -3'
miRNA:   3'- gaAGaaCGGCG-UCCUGa----------GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 95468 0.68 0.930067
Target:  5'- -aUCUUGCCGCacaggcccauccguAGGAgcCUCGA-GGCCa -3'
miRNA:   3'- gaAGAACGGCG--------------UCCU--GAGCUgCUGGa -5'
9234 5' -55.1 NC_002512.2 + 158978 0.68 0.926466
Target:  5'- gUUCggcgGCCacgGCGGGGCggaggCGGCGGCCc -3'
miRNA:   3'- gAAGaa--CGG---CGUCCUGa----GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 20271 0.68 0.926466
Target:  5'- -gUCcgGCCGCAGGucguacauCUCGugGACg- -3'
miRNA:   3'- gaAGaaCGGCGUCCu-------GAGCugCUGga -5'
9234 5' -55.1 NC_002512.2 + 115880 0.68 0.926466
Target:  5'- -----cGCUGCGGGGC-CGACGGCg- -3'
miRNA:   3'- gaagaaCGGCGUCCUGaGCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 98166 0.68 0.921127
Target:  5'- -----cGCCGCGgucuGGACgggcgCGGCGACCg -3'
miRNA:   3'- gaagaaCGGCGU----CCUGa----GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 94516 0.68 0.92058
Target:  5'- uCUUCgaacccGCC-CAGGACgaagcggUCGACGGCCa -3'
miRNA:   3'- -GAAGaa----CGGcGUCCUG-------AGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 225730 0.68 0.915559
Target:  5'- -----aGCCGCGGcGACUCGcucagucggggcGCGGCCg -3'
miRNA:   3'- gaagaaCGGCGUC-CUGAGC------------UGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 205547 0.68 0.909763
Target:  5'- -----aGCUGCAGGGCUUGAacaucaacagccCGACCg -3'
miRNA:   3'- gaagaaCGGCGUCCUGAGCU------------GCUGGa -5'
9234 5' -55.1 NC_002512.2 + 112192 0.68 0.909763
Target:  5'- -----cGCCGCAGGugcgccacgcaGCUCGuCGACCc -3'
miRNA:   3'- gaagaaCGGCGUCC-----------UGAGCuGCUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.