Results 21 - 40 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9234 | 5' | -55.1 | NC_002512.2 | + | 112749 | 0.66 | 0.967505 |
Target: 5'- ----gUGCUGCAGcGACUCGaACGccGCCg -3' miRNA: 3'- gaagaACGGCGUC-CUGAGC-UGC--UGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 93383 | 0.66 | 0.964373 |
Target: 5'- -aUCggGCCGCAGGGCgcgcCGaacGCGugCa -3' miRNA: 3'- gaAGaaCGGCGUCCUGa---GC---UGCugGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 121886 | 0.66 | 0.964373 |
Target: 5'- -----gGUCGCGGGggacGCUCGGCGACg- -3' miRNA: 3'- gaagaaCGGCGUCC----UGAGCUGCUGga -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 213632 | 0.66 | 0.964373 |
Target: 5'- -cUCUUgGCCGCcgcGGGCgacggCGACGACg- -3' miRNA: 3'- gaAGAA-CGGCGu--CCUGa----GCUGCUGga -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 92535 | 0.66 | 0.964373 |
Target: 5'- -aUCUacccgGCCGCGGcGGCcgCGGCGACg- -3' miRNA: 3'- gaAGAa----CGGCGUC-CUGa-GCUGCUGga -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 144621 | 0.66 | 0.961035 |
Target: 5'- -----cGCCGCGcuGGACgUGGCGGCCa -3' miRNA: 3'- gaagaaCGGCGU--CCUGaGCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 219425 | 0.66 | 0.961035 |
Target: 5'- -----cGCC-CGGGGCggCGGCGGCCUc -3' miRNA: 3'- gaagaaCGGcGUCCUGa-GCUGCUGGA- -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 42046 | 0.66 | 0.959993 |
Target: 5'- -aUCUUGCCGaCGaacuggcuccggacGGuCUgGACGACCa -3' miRNA: 3'- gaAGAACGGC-GU--------------CCuGAgCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 196386 | 0.67 | 0.957487 |
Target: 5'- aCUUCgggacGCCGCgggucuggcgcgGGGACgcggggggCGGCGGCCg -3' miRNA: 3'- -GAAGaa---CGGCG------------UCCUGa-------GCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 43035 | 0.67 | 0.957487 |
Target: 5'- -gUCgaGgCGCAGGucCUCGGCGACg- -3' miRNA: 3'- gaAGaaCgGCGUCCu-GAGCUGCUGga -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 44896 | 0.67 | 0.957487 |
Target: 5'- --cCggGCCGCAGcGCucacgUCGACGGCCg -3' miRNA: 3'- gaaGaaCGGCGUCcUG-----AGCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 97358 | 0.67 | 0.957487 |
Target: 5'- -----cGCCGCccgcggagcgGGGACcgCGGCGGCCg -3' miRNA: 3'- gaagaaCGGCG----------UCCUGa-GCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 120751 | 0.67 | 0.95712 |
Target: 5'- --cCggGCgGCGaguccgacgugcuGGACUCGGCGGCCg -3' miRNA: 3'- gaaGaaCGgCGU-------------CCUGAGCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 115781 | 0.67 | 0.951361 |
Target: 5'- ----gUGCCGUgcuacugcgacgacuGGGACgUCGACGACUa -3' miRNA: 3'- gaagaACGGCG---------------UCCUG-AGCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 22673 | 0.67 | 0.949742 |
Target: 5'- aCUUCgccaCGCAGGACUCGcgcuuccaGACCa -3' miRNA: 3'- -GAAGaacgGCGUCCUGAGCug------CUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 148756 | 0.67 | 0.949742 |
Target: 5'- cCUUCUUcgUGCGcGACuUCGACGACCUg -3' miRNA: 3'- -GAAGAAcgGCGUcCUG-AGCUGCUGGA- -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 130656 | 0.67 | 0.949742 |
Target: 5'- aCUUCUg--CGCGGGGCUCuccGAgGACCg -3' miRNA: 3'- -GAAGAacgGCGUCCUGAG---CUgCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 74642 | 0.67 | 0.949742 |
Target: 5'- -gUCgacGCCGCGacGGGCggGACGGCCg -3' miRNA: 3'- gaAGaa-CGGCGU--CCUGagCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 189970 | 0.67 | 0.948088 |
Target: 5'- uCUUCgaGCUGCGGGACcgCGucuacaggaagguCGACCUc -3' miRNA: 3'- -GAAGaaCGGCGUCCUGa-GCu------------GCUGGA- -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 35311 | 0.67 | 0.945539 |
Target: 5'- gCUUCuUUGCuaCGCGacGGACaCGGCGACCg -3' miRNA: 3'- -GAAG-AACG--GCGU--CCUGaGCUGCUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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