miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9234 5' -55.1 NC_002512.2 + 72880 0.73 0.694298
Target:  5'- ---gUUGUCGCGGGGCUCGggcccgaagcgGCGGCCg -3'
miRNA:   3'- gaagAACGGCGUCCUGAGC-----------UGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 74642 0.67 0.949742
Target:  5'- -gUCgacGCCGCGacGGGCggGACGGCCg -3'
miRNA:   3'- gaAGaa-CGGCGU--CCUGagCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 75090 0.69 0.897496
Target:  5'- -----cGCCGUuucgGGGGCUCGACGucGCCg -3'
miRNA:   3'- gaagaaCGGCG----UCCUGAGCUGC--UGGa -5'
9234 5' -55.1 NC_002512.2 + 81808 0.69 0.903742
Target:  5'- -----cGCCGgGGGACg-GACGACCg -3'
miRNA:   3'- gaagaaCGGCgUCCUGagCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 88988 0.66 0.970437
Target:  5'- gCUUCgugGCCGgGGGGC-CGACGGa-- -3'
miRNA:   3'- -GAAGaa-CGGCgUCCUGaGCUGCUgga -5'
9234 5' -55.1 NC_002512.2 + 90655 0.69 0.903742
Target:  5'- -----gGCCGCGgucucGGAgUCGGCGGCCg -3'
miRNA:   3'- gaagaaCGGCGU-----CCUgAGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 92228 0.71 0.823597
Target:  5'- gUUCgUGCCcgacgacCGGGACUCGgACGACCg -3'
miRNA:   3'- gAAGaACGGc------GUCCUGAGC-UGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 92535 0.66 0.964373
Target:  5'- -aUCUacccgGCCGCGGcGGCcgCGGCGACg- -3'
miRNA:   3'- gaAGAa----CGGCGUC-CUGa-GCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 93383 0.66 0.964373
Target:  5'- -aUCggGCCGCAGGGCgcgcCGaacGCGugCa -3'
miRNA:   3'- gaAGaaCGGCGUCCUGa---GC---UGCugGa -5'
9234 5' -55.1 NC_002512.2 + 94516 0.68 0.92058
Target:  5'- uCUUCgaacccGCC-CAGGACgaagcggUCGACGGCCa -3'
miRNA:   3'- -GAAGaa----CGGcGUCCUG-------AGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 95468 0.68 0.930067
Target:  5'- -aUCUUGCCGCacaggcccauccguAGGAgcCUCGA-GGCCa -3'
miRNA:   3'- gaAGAACGGCG--------------UCCU--GAGCUgCUGGa -5'
9234 5' -55.1 NC_002512.2 + 96227 0.71 0.806609
Target:  5'- -----gGCCGCGGcGGCggCGGCGACCg -3'
miRNA:   3'- gaagaaCGGCGUC-CUGa-GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 97358 0.67 0.957487
Target:  5'- -----cGCCGCccgcggagcgGGGACcgCGGCGGCCg -3'
miRNA:   3'- gaagaaCGGCG----------UCCUGa-GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 98166 0.68 0.921127
Target:  5'- -----cGCCGCGgucuGGACgggcgCGGCGACCg -3'
miRNA:   3'- gaagaaCGGCGU----CCUGa----GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 98616 0.66 0.970437
Target:  5'- -cUCUU-CCGCAGGAUggccgUGACGAgCg -3'
miRNA:   3'- gaAGAAcGGCGUCCUGa----GCUGCUgGa -5'
9234 5' -55.1 NC_002512.2 + 101459 0.67 0.945539
Target:  5'- -----gGCCGCccgcgaggAGGGCUcCGGCGACCc -3'
miRNA:   3'- gaagaaCGGCG--------UCCUGA-GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 101698 0.68 0.936458
Target:  5'- -gUCccGCCgGCGGcccGCUCGGCGACCUc -3'
miRNA:   3'- gaAGaaCGG-CGUCc--UGAGCUGCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 102503 0.75 0.614496
Target:  5'- gUUCccGCCGCGGGAgUCG-CGGCCg -3'
miRNA:   3'- gAAGaaCGGCGUCCUgAGCuGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 103309 0.7 0.855516
Target:  5'- -----cGUCGUAGGACagGACGGCCg -3'
miRNA:   3'- gaagaaCGGCGUCCUGagCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 105042 0.68 0.936458
Target:  5'- --cCUcGUCGCGGGccucGCUCGGCGACg- -3'
miRNA:   3'- gaaGAaCGGCGUCC----UGAGCUGCUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.