miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9234 5' -55.1 NC_002512.2 + 219126 0.66 0.973175
Target:  5'- -----cGCgGCGGGGC-CGACGACg- -3'
miRNA:   3'- gaagaaCGgCGUCCUGaGCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 145931 0.66 0.973175
Target:  5'- -----cGCCGcCGGGACUUcuuCGACCUg -3'
miRNA:   3'- gaagaaCGGC-GUCCUGAGcu-GCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 223792 0.66 0.970437
Target:  5'- -----cGUCGCcgGGGACgucggCGGCGACCg -3'
miRNA:   3'- gaagaaCGGCG--UCCUGa----GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 106469 0.66 0.970437
Target:  5'- --aCggGCgGCGGGAcCUCGACcGCCUc -3'
miRNA:   3'- gaaGaaCGgCGUCCU-GAGCUGcUGGA- -5'
9234 5' -55.1 NC_002512.2 + 214310 0.66 0.970437
Target:  5'- uCUUCggcgUGCCGCAcgagcaGGC-CGACGACUc -3'
miRNA:   3'- -GAAGa---ACGGCGUc-----CUGaGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 202459 0.66 0.967505
Target:  5'- cCUUUUUuCCGCGGacGCUCGGCGACg- -3'
miRNA:   3'- -GAAGAAcGGCGUCc-UGAGCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 21776 0.66 0.970437
Target:  5'- -----gGCCGCGucucuGGuuUCGACGACCa -3'
miRNA:   3'- gaagaaCGGCGU-----CCugAGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 98616 0.66 0.970437
Target:  5'- -cUCUU-CCGCAGGAUggccgUGACGAgCg -3'
miRNA:   3'- gaAGAAcGGCGUCCUGa----GCUGCUgGa -5'
9234 5' -55.1 NC_002512.2 + 176763 0.67 0.945539
Target:  5'- gCUUCggacGCCuGCAGGGCUCGG-GACa- -3'
miRNA:   3'- -GAAGaa--CGG-CGUCCUGAGCUgCUGga -5'
9234 5' -55.1 NC_002512.2 + 97358 0.67 0.957487
Target:  5'- -----cGCCGCccgcggagcgGGGACcgCGGCGGCCg -3'
miRNA:   3'- gaagaaCGGCG----------UCCUGa-GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 120751 0.67 0.95712
Target:  5'- --cCggGCgGCGaguccgacgugcuGGACUCGGCGGCCg -3'
miRNA:   3'- gaaGaaCGgCGU-------------CCUGAGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 22673 0.67 0.949742
Target:  5'- aCUUCgccaCGCAGGACUCGcgcuuccaGACCa -3'
miRNA:   3'- -GAAGaacgGCGUCCUGAGCug------CUGGa -5'
9234 5' -55.1 NC_002512.2 + 196386 0.67 0.957487
Target:  5'- aCUUCgggacGCCGCgggucuggcgcgGGGACgcggggggCGGCGGCCg -3'
miRNA:   3'- -GAAGaa---CGGCG------------UCCUGa-------GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 54257 0.67 0.940657
Target:  5'- -----aGCgGCAGGGCggcggcgUCGGCGACCc -3'
miRNA:   3'- gaagaaCGgCGUCCUG-------AGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 101459 0.67 0.945539
Target:  5'- -----gGCCGCccgcgaggAGGGCUcCGGCGACCc -3'
miRNA:   3'- gaagaaCGGCG--------UCCUGA-GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 189970 0.67 0.948088
Target:  5'- uCUUCgaGCUGCGGGACcgCGucuacaggaagguCGACCUc -3'
miRNA:   3'- -GAAGaaCGGCGUCCUGa-GCu------------GCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 35311 0.67 0.945539
Target:  5'- gCUUCuUUGCuaCGCGacGGACaCGGCGACCg -3'
miRNA:   3'- -GAAG-AACG--GCGU--CCUGaGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 44896 0.67 0.957487
Target:  5'- --cCggGCCGCAGcGCucacgUCGACGGCCg -3'
miRNA:   3'- gaaGaaCGGCGUCcUG-----AGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 74642 0.67 0.949742
Target:  5'- -gUCgacGCCGCGacGGGCggGACGGCCg -3'
miRNA:   3'- gaAGaa-CGGCGU--CCUGagCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 145249 0.67 0.941112
Target:  5'- aCUUCcuggGCCGCcgccuGGA--CGACGACCUg -3'
miRNA:   3'- -GAAGaa--CGGCGu----CCUgaGCUGCUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.