miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9234 5' -55.1 NC_002512.2 + 41283 1.08 0.006174
Target:  5'- gCUUCUUGCCGCAGGACUCGACGACCUg -3'
miRNA:   3'- -GAAGAACGGCGUCCUGAGCUGCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 120751 0.67 0.95712
Target:  5'- --cCggGCgGCGaguccgacgugcuGGACUCGGCGGCCg -3'
miRNA:   3'- gaaGaaCGgCGU-------------CCUGAGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 115781 0.67 0.951361
Target:  5'- ----gUGCCGUgcuacugcgacgacuGGGACgUCGACGACUa -3'
miRNA:   3'- gaagaACGGCG---------------UCCUG-AGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 119358 0.68 0.936458
Target:  5'- cCUUCUccGcCCGCGGGAUgguggacgacgCGGCGGCCc -3'
miRNA:   3'- -GAAGAa-C-GGCGUCCUGa----------GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 44309 0.7 0.839918
Target:  5'- gUUCUgcaugcUGCCGUuccAGGucccCUCGACGGCCa -3'
miRNA:   3'- gAAGA------ACGGCG---UCCu---GAGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 121886 0.66 0.964373
Target:  5'- -----gGUCGCGGGggacGCUCGGCGACg- -3'
miRNA:   3'- gaagaaCGGCGUCC----UGAGCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 97358 0.67 0.957487
Target:  5'- -----cGCCGCccgcggagcgGGGACcgCGGCGGCCg -3'
miRNA:   3'- gaagaaCGGCG----------UCCUGa-GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 48213 0.71 0.789016
Target:  5'- -aUCccgGCCGCGGGGCgCGACuACCUg -3'
miRNA:   3'- gaAGaa-CGGCGUCCUGaGCUGcUGGA- -5'
9234 5' -55.1 NC_002512.2 + 142023 0.67 0.941112
Target:  5'- uCUUCcgcgGCCG-GGGGC-CGGCGACCc -3'
miRNA:   3'- -GAAGaa--CGGCgUCCUGaGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 54257 0.67 0.940657
Target:  5'- -----aGCgGCAGGGCggcggcgUCGGCGACCc -3'
miRNA:   3'- gaagaaCGgCGUCCUG-------AGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 106165 0.72 0.752275
Target:  5'- -gUCUUGCCGUAGG-CguaCGGCGACg- -3'
miRNA:   3'- gaAGAACGGCGUCCuGa--GCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 129372 0.73 0.694298
Target:  5'- cCUUC-UGUCucguGCGGGuGCUCGACGACCg -3'
miRNA:   3'- -GAAGaACGG----CGUCC-UGAGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 88988 0.66 0.970437
Target:  5'- gCUUCgugGCCGgGGGGC-CGACGGa-- -3'
miRNA:   3'- -GAAGaa-CGGCgUCCUGaGCUGCUgga -5'
9234 5' -55.1 NC_002512.2 + 112749 0.66 0.967505
Target:  5'- ----gUGCUGCAGcGACUCGaACGccGCCg -3'
miRNA:   3'- gaagaACGGCGUC-CUGAGC-UGC--UGGa -5'
9234 5' -55.1 NC_002512.2 + 130656 0.67 0.949742
Target:  5'- aCUUCUg--CGCGGGGCUCuccGAgGACCg -3'
miRNA:   3'- -GAAGAacgGCGUCCUGAG---CUgCUGGa -5'
9234 5' -55.1 NC_002512.2 + 81808 0.69 0.903742
Target:  5'- -----cGCCGgGGGACg-GACGACCg -3'
miRNA:   3'- gaagaaCGGCgUCCUGagCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 75090 0.69 0.897496
Target:  5'- -----cGCCGUuucgGGGGCUCGACGucGCCg -3'
miRNA:   3'- gaagaaCGGCG----UCCUGAGCUGC--UGGa -5'
9234 5' -55.1 NC_002512.2 + 72880 0.73 0.694298
Target:  5'- ---gUUGUCGCGGGGCUCGggcccgaagcgGCGGCCg -3'
miRNA:   3'- gaagAACGGCGUCCUGAGC-----------UGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 105042 0.68 0.936458
Target:  5'- --cCUcGUCGCGGGccucGCUCGGCGACg- -3'
miRNA:   3'- gaaGAaCGGCGUCC----UGAGCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 57177 0.67 0.945539
Target:  5'- ---gUUGCCGCAGGGCaccUCG-CGGCa- -3'
miRNA:   3'- gaagAACGGCGUCCUG---AGCuGCUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.