miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9234 5' -55.1 NC_002512.2 + 54257 0.67 0.940657
Target:  5'- -----aGCgGCAGGGCggcggcgUCGGCGACCc -3'
miRNA:   3'- gaagaaCGgCGUCCUG-------AGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 95468 0.68 0.930067
Target:  5'- -aUCUUGCCGCacaggcccauccguAGGAgcCUCGA-GGCCa -3'
miRNA:   3'- gaAGAACGGCG--------------UCCU--GAGCUgCUGGa -5'
9234 5' -55.1 NC_002512.2 + 13658 0.71 0.823597
Target:  5'- -gUCUcGCCGCGgcuccagcucccGGACgaggCGACGGCCg -3'
miRNA:   3'- gaAGAaCGGCGU------------CCUGa---GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 130145 0.74 0.664522
Target:  5'- -gUCgcgGCCGCGGGGCcCGGCGGCg- -3'
miRNA:   3'- gaAGaa-CGGCGUCCUGaGCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 42046 0.66 0.959993
Target:  5'- -aUCUUGCCGaCGaacuggcuccggacGGuCUgGACGACCa -3'
miRNA:   3'- gaAGAACGGC-GU--------------CCuGAgCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 22673 0.67 0.949742
Target:  5'- aCUUCgccaCGCAGGACUCGcgcuuccaGACCa -3'
miRNA:   3'- -GAAGaacgGCGUCCUGAGCug------CUGGa -5'
9234 5' -55.1 NC_002512.2 + 20271 0.68 0.926466
Target:  5'- -gUCcgGCCGCAGGucguacauCUCGugGACg- -3'
miRNA:   3'- gaAGaaCGGCGUCCu-------GAGCugCUGga -5'
9234 5' -55.1 NC_002512.2 + 102503 0.75 0.614496
Target:  5'- gUUCccGCCGCGGGAgUCG-CGGCCg -3'
miRNA:   3'- gAAGaaCGGCGUCCUgAGCuGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 101459 0.67 0.945539
Target:  5'- -----gGCCGCccgcgaggAGGGCUcCGGCGACCc -3'
miRNA:   3'- gaagaaCGGCG--------UCCUGA-GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 12775 0.82 0.262005
Target:  5'- -----cGCCGCAGGACUCGGCGGCg- -3'
miRNA:   3'- gaagaaCGGCGUCCUGAGCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 115880 0.68 0.926466
Target:  5'- -----cGCUGCGGGGC-CGACGGCg- -3'
miRNA:   3'- gaagaaCGGCGUCCUGaGCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 117007 0.67 0.940657
Target:  5'- -----cGCaCGCAGGGCgggcgcaagaucaUCGGCGGCCg -3'
miRNA:   3'- gaagaaCG-GCGUCCUG-------------AGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 124857 0.69 0.903742
Target:  5'- uUUC-UGCuacaugaccugCGCGGGGCUCGACGcGCCc -3'
miRNA:   3'- gAAGaACG-----------GCGUCCUGAGCUGC-UGGa -5'
9234 5' -55.1 NC_002512.2 + 118608 0.7 0.831844
Target:  5'- -gUCUgGCCGCGGGACgUCGAC-AUCa -3'
miRNA:   3'- gaAGAaCGGCGUCCUG-AGCUGcUGGa -5'
9234 5' -55.1 NC_002512.2 + 17780 0.72 0.780013
Target:  5'- gCUUCUcGCCGUGGaACUCGGCGAgCa -3'
miRNA:   3'- -GAAGAaCGGCGUCcUGAGCUGCUgGa -5'
9234 5' -55.1 NC_002512.2 + 72880 0.73 0.694298
Target:  5'- ---gUUGUCGCGGGGCUCGggcccgaagcgGCGGCCg -3'
miRNA:   3'- gaagAACGGCGUCCUGAGC-----------UGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 123224 0.66 0.969578
Target:  5'- -gUCgccGCCcaguGCGGGcucgacuucuucgaGCUCGACGACCg -3'
miRNA:   3'- gaAGaa-CGG----CGUCC--------------UGAGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 93383 0.66 0.964373
Target:  5'- -aUCggGCCGCAGGGCgcgcCGaacGCGugCa -3'
miRNA:   3'- gaAGaaCGGCGUCCUGa---GC---UGCugGa -5'
9234 5' -55.1 NC_002512.2 + 43035 0.67 0.957487
Target:  5'- -gUCgaGgCGCAGGucCUCGGCGACg- -3'
miRNA:   3'- gaAGaaCgGCGUCCu-GAGCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 130656 0.67 0.949742
Target:  5'- aCUUCUg--CGCGGGGCUCuccGAgGACCg -3'
miRNA:   3'- -GAAGAacgGCGUCCUGAG---CUgCUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.