Results 21 - 40 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9234 | 5' | -55.1 | NC_002512.2 | + | 41283 | 1.08 | 0.006174 |
Target: 5'- gCUUCUUGCCGCAGGACUCGACGACCUg -3' miRNA: 3'- -GAAGAACGGCGUCCUGAGCUGCUGGA- -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 120751 | 0.67 | 0.95712 |
Target: 5'- --cCggGCgGCGaguccgacgugcuGGACUCGGCGGCCg -3' miRNA: 3'- gaaGaaCGgCGU-------------CCUGAGCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 115781 | 0.67 | 0.951361 |
Target: 5'- ----gUGCCGUgcuacugcgacgacuGGGACgUCGACGACUa -3' miRNA: 3'- gaagaACGGCG---------------UCCUG-AGCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 119358 | 0.68 | 0.936458 |
Target: 5'- cCUUCUccGcCCGCGGGAUgguggacgacgCGGCGGCCc -3' miRNA: 3'- -GAAGAa-C-GGCGUCCUGa----------GCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 44309 | 0.7 | 0.839918 |
Target: 5'- gUUCUgcaugcUGCCGUuccAGGucccCUCGACGGCCa -3' miRNA: 3'- gAAGA------ACGGCG---UCCu---GAGCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 121886 | 0.66 | 0.964373 |
Target: 5'- -----gGUCGCGGGggacGCUCGGCGACg- -3' miRNA: 3'- gaagaaCGGCGUCC----UGAGCUGCUGga -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 97358 | 0.67 | 0.957487 |
Target: 5'- -----cGCCGCccgcggagcgGGGACcgCGGCGGCCg -3' miRNA: 3'- gaagaaCGGCG----------UCCUGa-GCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 48213 | 0.71 | 0.789016 |
Target: 5'- -aUCccgGCCGCGGGGCgCGACuACCUg -3' miRNA: 3'- gaAGaa-CGGCGUCCUGaGCUGcUGGA- -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 142023 | 0.67 | 0.941112 |
Target: 5'- uCUUCcgcgGCCG-GGGGC-CGGCGACCc -3' miRNA: 3'- -GAAGaa--CGGCgUCCUGaGCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 54257 | 0.67 | 0.940657 |
Target: 5'- -----aGCgGCAGGGCggcggcgUCGGCGACCc -3' miRNA: 3'- gaagaaCGgCGUCCUG-------AGCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 106165 | 0.72 | 0.752275 |
Target: 5'- -gUCUUGCCGUAGG-CguaCGGCGACg- -3' miRNA: 3'- gaAGAACGGCGUCCuGa--GCUGCUGga -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 129372 | 0.73 | 0.694298 |
Target: 5'- cCUUC-UGUCucguGCGGGuGCUCGACGACCg -3' miRNA: 3'- -GAAGaACGG----CGUCC-UGAGCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 88988 | 0.66 | 0.970437 |
Target: 5'- gCUUCgugGCCGgGGGGC-CGACGGa-- -3' miRNA: 3'- -GAAGaa-CGGCgUCCUGaGCUGCUgga -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 112749 | 0.66 | 0.967505 |
Target: 5'- ----gUGCUGCAGcGACUCGaACGccGCCg -3' miRNA: 3'- gaagaACGGCGUC-CUGAGC-UGC--UGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 130656 | 0.67 | 0.949742 |
Target: 5'- aCUUCUg--CGCGGGGCUCuccGAgGACCg -3' miRNA: 3'- -GAAGAacgGCGUCCUGAG---CUgCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 81808 | 0.69 | 0.903742 |
Target: 5'- -----cGCCGgGGGACg-GACGACCg -3' miRNA: 3'- gaagaaCGGCgUCCUGagCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 75090 | 0.69 | 0.897496 |
Target: 5'- -----cGCCGUuucgGGGGCUCGACGucGCCg -3' miRNA: 3'- gaagaaCGGCG----UCCUGAGCUGC--UGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 72880 | 0.73 | 0.694298 |
Target: 5'- ---gUUGUCGCGGGGCUCGggcccgaagcgGCGGCCg -3' miRNA: 3'- gaagAACGGCGUCCUGAGC-----------UGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 105042 | 0.68 | 0.936458 |
Target: 5'- --cCUcGUCGCGGGccucGCUCGGCGACg- -3' miRNA: 3'- gaaGAaCGGCGUCC----UGAGCUGCUGga -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 57177 | 0.67 | 0.945539 |
Target: 5'- ---gUUGCCGCAGGGCaccUCG-CGGCa- -3' miRNA: 3'- gaagAACGGCGUCCUG---AGCuGCUGga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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