miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9234 5' -55.1 NC_002512.2 + 93383 0.66 0.964373
Target:  5'- -aUCggGCCGCAGGGCgcgcCGaacGCGugCa -3'
miRNA:   3'- gaAGaaCGGCGUCCUGa---GC---UGCugGa -5'
9234 5' -55.1 NC_002512.2 + 119358 0.68 0.936458
Target:  5'- cCUUCUccGcCCGCGGGAUgguggacgacgCGGCGGCCc -3'
miRNA:   3'- -GAAGAa-C-GGCGUCCUGa----------GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 95468 0.68 0.930067
Target:  5'- -aUCUUGCCGCacaggcccauccguAGGAgcCUCGA-GGCCa -3'
miRNA:   3'- gaAGAACGGCG--------------UCCU--GAGCUgCUGGa -5'
9234 5' -55.1 NC_002512.2 + 196675 0.66 0.975724
Target:  5'- -cUCUgacUGCCgGCGGGACgagCGGC-ACCg -3'
miRNA:   3'- gaAGA---ACGG-CGUCCUGa--GCUGcUGGa -5'
9234 5' -55.1 NC_002512.2 + 225730 0.68 0.915559
Target:  5'- -----aGCCGCGGcGACUCGcucagucggggcGCGGCCg -3'
miRNA:   3'- gaagaaCGGCGUC-CUGAGC------------UGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 145931 0.66 0.973175
Target:  5'- -----cGCCGcCGGGACUUcuuCGACCUg -3'
miRNA:   3'- gaagaaCGGC-GUCCUGAGcu-GCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 219126 0.66 0.973175
Target:  5'- -----cGCgGCGGGGC-CGACGACg- -3'
miRNA:   3'- gaagaaCGgCGUCCUGaGCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 121983 0.66 0.974727
Target:  5'- -----cGCCgGCGGGACgagaggaagaucgCGGCGGCCa -3'
miRNA:   3'- gaagaaCGG-CGUCCUGa------------GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 106469 0.66 0.970437
Target:  5'- --aCggGCgGCGGGAcCUCGACcGCCUc -3'
miRNA:   3'- gaaGaaCGgCGUCCU-GAGCUGcUGGA- -5'
9234 5' -55.1 NC_002512.2 + 202459 0.66 0.967505
Target:  5'- cCUUUUUuCCGCGGacGCUCGGCGACg- -3'
miRNA:   3'- -GAAGAAcGGCGUCc-UGAGCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 98166 0.68 0.921127
Target:  5'- -----cGCCGCGgucuGGACgggcgCGGCGACCg -3'
miRNA:   3'- gaagaaCGGCGU----CCUGa----GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 158978 0.68 0.926466
Target:  5'- gUUCggcgGCCacgGCGGGGCggaggCGGCGGCCc -3'
miRNA:   3'- gAAGaa--CGG---CGUCCUGa----GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 188634 0.68 0.931576
Target:  5'- -cUCggGCCGCaAGGGCgccggcggcggCGGCGGCCc -3'
miRNA:   3'- gaAGaaCGGCG-UCCUGa----------GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 101698 0.68 0.936458
Target:  5'- -gUCccGCCgGCGGcccGCUCGGCGACCUc -3'
miRNA:   3'- gaAGaaCGG-CGUCc--UGAGCUGCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 145249 0.67 0.941112
Target:  5'- aCUUCcuggGCCGCcgccuGGA--CGACGACCUg -3'
miRNA:   3'- -GAAGaa--CGGCGu----CCUgaGCUGCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 35311 0.67 0.945539
Target:  5'- gCUUCuUUGCuaCGCGacGGACaCGGCGACCg -3'
miRNA:   3'- -GAAG-AACG--GCGU--CCUGaGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 176763 0.67 0.945539
Target:  5'- gCUUCggacGCCuGCAGGGCUCGG-GACa- -3'
miRNA:   3'- -GAAGaa--CGG-CGUCCUGAGCUgCUGga -5'
9234 5' -55.1 NC_002512.2 + 189970 0.67 0.948088
Target:  5'- uCUUCgaGCUGCGGGACcgCGucuacaggaagguCGACCUc -3'
miRNA:   3'- -GAAGaaCGGCGUCCUGa-GCu------------GCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 213632 0.66 0.964373
Target:  5'- -cUCUUgGCCGCcgcGGGCgacggCGACGACg- -3'
miRNA:   3'- gaAGAA-CGGCGu--CCUGa----GCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 70643 0.66 0.967505
Target:  5'- ----gUGCCGuCAGGACcauUC-ACGACCUa -3'
miRNA:   3'- gaagaACGGC-GUCCUG---AGcUGCUGGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.