miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9234 5' -55.1 NC_002512.2 + 142049 0.66 0.975724
Target:  5'- -----cGCCGCgAGGGCcCGACGcCCg -3'
miRNA:   3'- gaagaaCGGCG-UCCUGaGCUGCuGGa -5'
9234 5' -55.1 NC_002512.2 + 101459 0.67 0.945539
Target:  5'- -----gGCCGCccgcgaggAGGGCUcCGGCGACCc -3'
miRNA:   3'- gaagaaCGGCG--------UCCUGA-GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 120751 0.67 0.95712
Target:  5'- --cCggGCgGCGaguccgacgugcuGGACUCGGCGGCCg -3'
miRNA:   3'- gaaGaaCGgCGU-------------CCUGAGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 123224 0.66 0.969578
Target:  5'- -gUCgccGCCcaguGCGGGcucgacuucuucgaGCUCGACGACCg -3'
miRNA:   3'- gaAGaa-CGG----CGUCC--------------UGAGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 223792 0.66 0.970437
Target:  5'- -----cGUCGCcgGGGACgucggCGGCGACCg -3'
miRNA:   3'- gaagaaCGGCG--UCCUGa----GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 219126 0.66 0.973175
Target:  5'- -----cGCgGCGGGGC-CGACGACg- -3'
miRNA:   3'- gaagaaCGgCGUCCUGaGCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 34623 0.66 0.973175
Target:  5'- aCUUCgagUGucCCGCcuGugUCGACGAUCa -3'
miRNA:   3'- -GAAGa--AC--GGCGucCugAGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 156473 0.66 0.975724
Target:  5'- -cUCggggGCgGCGGG-CUCGGCGGgCUg -3'
miRNA:   3'- gaAGaa--CGgCGUCCuGAGCUGCUgGA- -5'
9234 5' -55.1 NC_002512.2 + 214310 0.66 0.970437
Target:  5'- uCUUCggcgUGCCGCAcgagcaGGC-CGACGACUc -3'
miRNA:   3'- -GAAGa---ACGGCGUc-----CUGaGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 106469 0.66 0.970437
Target:  5'- --aCggGCgGCGGGAcCUCGACcGCCUc -3'
miRNA:   3'- gaaGaaCGgCGUCCU-GAGCUGcUGGA- -5'
9234 5' -55.1 NC_002512.2 + 202459 0.66 0.967505
Target:  5'- cCUUUUUuCCGCGGacGCUCGGCGACg- -3'
miRNA:   3'- -GAAGAAcGGCGUCc-UGAGCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 70643 0.66 0.967505
Target:  5'- ----gUGCCGuCAGGACcauUC-ACGACCUa -3'
miRNA:   3'- gaagaACGGC-GUCCUG---AGcUGCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 196386 0.67 0.957487
Target:  5'- aCUUCgggacGCCGCgggucuggcgcgGGGACgcggggggCGGCGGCCg -3'
miRNA:   3'- -GAAGaa---CGGCG------------UCCUGa-------GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 35311 0.67 0.945539
Target:  5'- gCUUCuUUGCuaCGCGacGGACaCGGCGACCg -3'
miRNA:   3'- -GAAG-AACG--GCGU--CCUGaGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 176763 0.67 0.945539
Target:  5'- gCUUCggacGCCuGCAGGGCUCGG-GACa- -3'
miRNA:   3'- -GAAGaa--CGG-CGUCCUGAGCUgCUGga -5'
9234 5' -55.1 NC_002512.2 + 145249 0.67 0.941112
Target:  5'- aCUUCcuggGCCGCcgccuGGA--CGACGACCUg -3'
miRNA:   3'- -GAAGaa--CGGCGu----CCUgaGCUGCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 101698 0.68 0.936458
Target:  5'- -gUCccGCCgGCGGcccGCUCGGCGACCUc -3'
miRNA:   3'- gaAGaaCGG-CGUCc--UGAGCUGCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 188634 0.68 0.931576
Target:  5'- -cUCggGCCGCaAGGGCgccggcggcggCGGCGGCCc -3'
miRNA:   3'- gaAGaaCGGCG-UCCUGa----------GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 158978 0.68 0.926466
Target:  5'- gUUCggcgGCCacgGCGGGGCggaggCGGCGGCCc -3'
miRNA:   3'- gAAGaa--CGG---CGUCCUGa----GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 98166 0.68 0.921127
Target:  5'- -----cGCCGCGgucuGGACgggcgCGGCGACCg -3'
miRNA:   3'- gaagaaCGGCGU----CCUGa----GCUGCUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.