miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9234 5' -55.1 NC_002512.2 + 12775 0.82 0.262005
Target:  5'- -----cGCCGCAGGACUCGGCGGCg- -3'
miRNA:   3'- gaagaaCGGCGUCCUGAGCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 13658 0.71 0.823597
Target:  5'- -gUCUcGCCGCGgcuccagcucccGGACgaggCGACGGCCg -3'
miRNA:   3'- gaAGAaCGGCGU------------CCUGa---GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 17780 0.72 0.780013
Target:  5'- gCUUCUcGCCGUGGaACUCGGCGAgCa -3'
miRNA:   3'- -GAAGAaCGGCGUCcUGAGCUGCUgGa -5'
9234 5' -55.1 NC_002512.2 + 19356 0.71 0.815182
Target:  5'- ----aUGCCGgaccgucgGGGGCUCGGCGGCCUc -3'
miRNA:   3'- gaagaACGGCg-------UCCUGAGCUGCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 20271 0.68 0.926466
Target:  5'- -gUCcgGCCGCAGGucguacauCUCGugGACg- -3'
miRNA:   3'- gaAGaaCGGCGUCCu-------GAGCugCUGga -5'
9234 5' -55.1 NC_002512.2 + 21776 0.66 0.970437
Target:  5'- -----gGCCGCGucucuGGuuUCGACGACCa -3'
miRNA:   3'- gaagaaCGGCGU-----CCugAGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 22673 0.67 0.949742
Target:  5'- aCUUCgccaCGCAGGACUCGcgcuuccaGACCa -3'
miRNA:   3'- -GAAGaacgGCGUCCUGAGCug------CUGGa -5'
9234 5' -55.1 NC_002512.2 + 26168 0.66 0.975724
Target:  5'- -gUCUccgUGUCGCAGGcCggcgGGCGACCg -3'
miRNA:   3'- gaAGA---ACGGCGUCCuGag--CUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 34623 0.66 0.973175
Target:  5'- aCUUCgagUGucCCGCcuGugUCGACGAUCa -3'
miRNA:   3'- -GAAGa--AC--GGCGucCugAGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 35311 0.67 0.945539
Target:  5'- gCUUCuUUGCuaCGCGacGGACaCGGCGACCg -3'
miRNA:   3'- -GAAG-AACG--GCGU--CCUGaGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 41283 1.08 0.006174
Target:  5'- gCUUCUUGCCGCAGGACUCGACGACCUg -3'
miRNA:   3'- -GAAGAACGGCGUCCUGAGCUGCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 42046 0.66 0.959993
Target:  5'- -aUCUUGCCGaCGaacuggcuccggacGGuCUgGACGACCa -3'
miRNA:   3'- gaAGAACGGC-GU--------------CCuGAgCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 43035 0.67 0.957487
Target:  5'- -gUCgaGgCGCAGGucCUCGGCGACg- -3'
miRNA:   3'- gaAGaaCgGCGUCCu-GAGCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 44309 0.7 0.839918
Target:  5'- gUUCUgcaugcUGCCGUuccAGGucccCUCGACGGCCa -3'
miRNA:   3'- gAAGA------ACGGCG---UCCu---GAGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 44896 0.67 0.957487
Target:  5'- --cCggGCCGCAGcGCucacgUCGACGGCCg -3'
miRNA:   3'- gaaGaaCGGCGUCcUG-----AGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 48213 0.71 0.789016
Target:  5'- -aUCccgGCCGCGGGGCgCGACuACCUg -3'
miRNA:   3'- gaAGaa-CGGCGUCCUGaGCUGcUGGA- -5'
9234 5' -55.1 NC_002512.2 + 54257 0.67 0.940657
Target:  5'- -----aGCgGCAGGGCggcggcgUCGGCGACCc -3'
miRNA:   3'- gaagaaCGgCGUCCUG-------AGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 57177 0.67 0.945539
Target:  5'- ---gUUGCCGCAGGGCaccUCG-CGGCa- -3'
miRNA:   3'- gaagAACGGCGUCCUG---AGCuGCUGga -5'
9234 5' -55.1 NC_002512.2 + 59479 0.69 0.884346
Target:  5'- --cCUcGCCaGCGGGuCUCGAgCGGCCUg -3'
miRNA:   3'- gaaGAaCGG-CGUCCuGAGCU-GCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 70643 0.66 0.967505
Target:  5'- ----gUGCCGuCAGGACcauUC-ACGACCUa -3'
miRNA:   3'- gaagaACGGC-GUCCUG---AGcUGCUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.