miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9234 5' -55.1 NC_002512.2 + 226395 0.66 0.970437
Target:  5'- ----cUGCgaCGCAGGAgUCGGCGGCg- -3'
miRNA:   3'- gaagaACG--GCGUCCUgAGCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 225730 0.68 0.915559
Target:  5'- -----aGCCGCGGcGACUCGcucagucggggcGCGGCCg -3'
miRNA:   3'- gaagaaCGGCGUC-CUGAGC------------UGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 223792 0.66 0.970437
Target:  5'- -----cGUCGCcgGGGACgucggCGGCGACCg -3'
miRNA:   3'- gaagaaCGGCG--UCCUGa----GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 219560 0.66 0.975724
Target:  5'- -gUCUUcGCCG-GGGACgugugCGACGGCUc -3'
miRNA:   3'- gaAGAA-CGGCgUCCUGa----GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 219425 0.66 0.961035
Target:  5'- -----cGCC-CGGGGCggCGGCGGCCUc -3'
miRNA:   3'- gaagaaCGGcGUCCUGa-GCUGCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 219126 0.66 0.973175
Target:  5'- -----cGCgGCGGGGC-CGACGACg- -3'
miRNA:   3'- gaagaaCGgCGUCCUGaGCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 214310 0.66 0.970437
Target:  5'- uCUUCggcgUGCCGCAcgagcaGGC-CGACGACUc -3'
miRNA:   3'- -GAAGa---ACGGCGUc-----CUGaGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 213632 0.66 0.964373
Target:  5'- -cUCUUgGCCGCcgcGGGCgacggCGACGACg- -3'
miRNA:   3'- gaAGAA-CGGCGu--CCUGa----GCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 213283 0.7 0.855516
Target:  5'- gCUUCaucaGCCGCGuGGC-CGACGACCUc -3'
miRNA:   3'- -GAAGaa--CGGCGUcCUGaGCUGCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 205547 0.68 0.909763
Target:  5'- -----aGCUGCAGGGCUUGAacaucaacagccCGACCg -3'
miRNA:   3'- gaagaaCGGCGUCCUGAGCU------------GCUGGa -5'
9234 5' -55.1 NC_002512.2 + 202459 0.66 0.967505
Target:  5'- cCUUUUUuCCGCGGacGCUCGGCGACg- -3'
miRNA:   3'- -GAAGAAcGGCGUCc-UGAGCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 196675 0.66 0.975724
Target:  5'- -cUCUgacUGCCgGCGGGACgagCGGC-ACCg -3'
miRNA:   3'- gaAGA---ACGG-CGUCCUGa--GCUGcUGGa -5'
9234 5' -55.1 NC_002512.2 + 196386 0.67 0.957487
Target:  5'- aCUUCgggacGCCGCgggucuggcgcgGGGACgcggggggCGGCGGCCg -3'
miRNA:   3'- -GAAGaa---CGGCG------------UCCUGa-------GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 194899 0.66 0.973175
Target:  5'- cCUUCUccuCCGCGGGACgCGA-GGCCc -3'
miRNA:   3'- -GAAGAac-GGCGUCCUGaGCUgCUGGa -5'
9234 5' -55.1 NC_002512.2 + 194387 0.74 0.674483
Target:  5'- -----cGCUGCAGGACUUcugGACGGCCg -3'
miRNA:   3'- gaagaaCGGCGUCCUGAG---CUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 189970 0.67 0.948088
Target:  5'- uCUUCgaGCUGCGGGACcgCGucuacaggaagguCGACCUc -3'
miRNA:   3'- -GAAGaaCGGCGUCCUGa-GCu------------GCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 188634 0.68 0.931576
Target:  5'- -cUCggGCCGCaAGGGCgccggcggcggCGGCGGCCc -3'
miRNA:   3'- gaAGaaCGGCG-UCCUGa----------GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 176763 0.67 0.945539
Target:  5'- gCUUCggacGCCuGCAGGGCUCGG-GACa- -3'
miRNA:   3'- -GAAGaa--CGG-CGUCCUGAGCUgCUGga -5'
9234 5' -55.1 NC_002512.2 + 167749 0.69 0.89103
Target:  5'- -----aGCUGCcGGGCgUCGGCGACCg -3'
miRNA:   3'- gaagaaCGGCGuCCUG-AGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 158978 0.68 0.926466
Target:  5'- gUUCggcgGCCacgGCGGGGCggaggCGGCGGCCc -3'
miRNA:   3'- gAAGaa--CGG---CGUCCUGa----GCUGCUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.