miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9234 5' -55.1 NC_002512.2 + 41283 1.08 0.006174
Target:  5'- gCUUCUUGCCGCAGGACUCGACGACCUg -3'
miRNA:   3'- -GAAGAACGGCGUCCUGAGCUGCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 12775 0.82 0.262005
Target:  5'- -----cGCCGCAGGACUCGGCGGCg- -3'
miRNA:   3'- gaagaaCGGCGUCCUGAGCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 146177 0.77 0.500968
Target:  5'- ----cUGCCGCGcggcacggucgcccuGGGCUCGACGACCg -3'
miRNA:   3'- gaagaACGGCGU---------------CCUGAGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 102503 0.75 0.614496
Target:  5'- gUUCccGCCGCGGGAgUCG-CGGCCg -3'
miRNA:   3'- gAAGaaCGGCGUCCUgAGCuGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 130145 0.74 0.664522
Target:  5'- -gUCgcgGCCGCGGGGCcCGGCGGCg- -3'
miRNA:   3'- gaAGaa-CGGCGUCCUGaGCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 194387 0.74 0.674483
Target:  5'- -----cGCUGCAGGACUUcugGACGGCCg -3'
miRNA:   3'- gaagaaCGGCGUCCUGAG---CUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 129372 0.73 0.694298
Target:  5'- cCUUC-UGUCucguGCGGGuGCUCGACGACCg -3'
miRNA:   3'- -GAAGaACGG----CGUCC-UGAGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 72880 0.73 0.694298
Target:  5'- ---gUUGUCGCGGGGCUCGggcccgaagcgGCGGCCg -3'
miRNA:   3'- gaagAACGGCGUCCUGAGC-----------UGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 146739 0.72 0.742815
Target:  5'- -----gGCCGCcGGGCcCGACGACCUc -3'
miRNA:   3'- gaagaaCGGCGuCCUGaGCUGCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 106165 0.72 0.752275
Target:  5'- -gUCUUGCCGUAGG-CguaCGGCGACg- -3'
miRNA:   3'- gaAGAACGGCGUCCuGa--GCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 149227 0.72 0.761634
Target:  5'- -----cGCCGCGGGAC-CGACgGACCc -3'
miRNA:   3'- gaagaaCGGCGUCCUGaGCUG-CUGGa -5'
9234 5' -55.1 NC_002512.2 + 17780 0.72 0.780013
Target:  5'- gCUUCUcGCCGUGGaACUCGGCGAgCa -3'
miRNA:   3'- -GAAGAaCGGCGUCcUGAGCUGCUgGa -5'
9234 5' -55.1 NC_002512.2 + 48213 0.71 0.789016
Target:  5'- -aUCccgGCCGCGGGGCgCGACuACCUg -3'
miRNA:   3'- gaAGaa-CGGCGUCCUGaGCUGcUGGA- -5'
9234 5' -55.1 NC_002512.2 + 96227 0.71 0.806609
Target:  5'- -----gGCCGCGGcGGCggCGGCGACCg -3'
miRNA:   3'- gaagaaCGGCGUC-CUGa-GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 19356 0.71 0.815182
Target:  5'- ----aUGCCGgaccgucgGGGGCUCGGCGGCCUc -3'
miRNA:   3'- gaagaACGGCg-------UCCUGAGCUGCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 13658 0.71 0.823597
Target:  5'- -gUCUcGCCGCGgcuccagcucccGGACgaggCGACGGCCg -3'
miRNA:   3'- gaAGAaCGGCGU------------CCUGa---GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 92228 0.71 0.823597
Target:  5'- gUUCgUGCCcgacgacCGGGACUCGgACGACCg -3'
miRNA:   3'- gAAGaACGGc------GUCCUGAGC-UGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 118608 0.7 0.831844
Target:  5'- -gUCUgGCCGCGGGACgUCGAC-AUCa -3'
miRNA:   3'- gaAGAaCGGCGUCCUG-AGCUGcUGGa -5'
9234 5' -55.1 NC_002512.2 + 44309 0.7 0.839918
Target:  5'- gUUCUgcaugcUGCCGUuccAGGucccCUCGACGGCCa -3'
miRNA:   3'- gAAGA------ACGGCG---UCCu---GAGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 213283 0.7 0.855516
Target:  5'- gCUUCaucaGCCGCGuGGC-CGACGACCUc -3'
miRNA:   3'- -GAAGaa--CGGCGUcCUGaGCUGCUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.