Results 41 - 60 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9234 | 5' | -55.1 | NC_002512.2 | + | 117007 | 0.67 | 0.940657 |
Target: 5'- -----cGCaCGCAGGGCgggcgcaagaucaUCGGCGGCCg -3' miRNA: 3'- gaagaaCG-GCGUCCUG-------------AGCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 115880 | 0.68 | 0.926466 |
Target: 5'- -----cGCUGCGGGGC-CGACGGCg- -3' miRNA: 3'- gaagaaCGGCGUCCUGaGCUGCUGga -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 115781 | 0.67 | 0.951361 |
Target: 5'- ----gUGCCGUgcuacugcgacgacuGGGACgUCGACGACUa -3' miRNA: 3'- gaagaACGGCG---------------UCCUG-AGCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 112749 | 0.66 | 0.967505 |
Target: 5'- ----gUGCUGCAGcGACUCGaACGccGCCg -3' miRNA: 3'- gaagaACGGCGUC-CUGAGC-UGC--UGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 112192 | 0.68 | 0.909763 |
Target: 5'- -----cGCCGCAGGugcgccacgcaGCUCGuCGACCc -3' miRNA: 3'- gaagaaCGGCGUCC-----------UGAGCuGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 106469 | 0.66 | 0.970437 |
Target: 5'- --aCggGCgGCGGGAcCUCGACcGCCUc -3' miRNA: 3'- gaaGaaCGgCGUCCU-GAGCUGcUGGA- -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 106165 | 0.72 | 0.752275 |
Target: 5'- -gUCUUGCCGUAGG-CguaCGGCGACg- -3' miRNA: 3'- gaAGAACGGCGUCCuGa--GCUGCUGga -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 105042 | 0.68 | 0.936458 |
Target: 5'- --cCUcGUCGCGGGccucGCUCGGCGACg- -3' miRNA: 3'- gaaGAaCGGCGUCC----UGAGCUGCUGga -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 103309 | 0.7 | 0.855516 |
Target: 5'- -----cGUCGUAGGACagGACGGCCg -3' miRNA: 3'- gaagaaCGGCGUCCUGagCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 102503 | 0.75 | 0.614496 |
Target: 5'- gUUCccGCCGCGGGAgUCG-CGGCCg -3' miRNA: 3'- gAAGaaCGGCGUCCUgAGCuGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 101698 | 0.68 | 0.936458 |
Target: 5'- -gUCccGCCgGCGGcccGCUCGGCGACCUc -3' miRNA: 3'- gaAGaaCGG-CGUCc--UGAGCUGCUGGA- -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 101459 | 0.67 | 0.945539 |
Target: 5'- -----gGCCGCccgcgaggAGGGCUcCGGCGACCc -3' miRNA: 3'- gaagaaCGGCG--------UCCUGA-GCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 98616 | 0.66 | 0.970437 |
Target: 5'- -cUCUU-CCGCAGGAUggccgUGACGAgCg -3' miRNA: 3'- gaAGAAcGGCGUCCUGa----GCUGCUgGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 98166 | 0.68 | 0.921127 |
Target: 5'- -----cGCCGCGgucuGGACgggcgCGGCGACCg -3' miRNA: 3'- gaagaaCGGCGU----CCUGa----GCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 97358 | 0.67 | 0.957487 |
Target: 5'- -----cGCCGCccgcggagcgGGGACcgCGGCGGCCg -3' miRNA: 3'- gaagaaCGGCG----------UCCUGa-GCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 96227 | 0.71 | 0.806609 |
Target: 5'- -----gGCCGCGGcGGCggCGGCGACCg -3' miRNA: 3'- gaagaaCGGCGUC-CUGa-GCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 95468 | 0.68 | 0.930067 |
Target: 5'- -aUCUUGCCGCacaggcccauccguAGGAgcCUCGA-GGCCa -3' miRNA: 3'- gaAGAACGGCG--------------UCCU--GAGCUgCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 94516 | 0.68 | 0.92058 |
Target: 5'- uCUUCgaacccGCC-CAGGACgaagcggUCGACGGCCa -3' miRNA: 3'- -GAAGaa----CGGcGUCCUG-------AGCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 93383 | 0.66 | 0.964373 |
Target: 5'- -aUCggGCCGCAGGGCgcgcCGaacGCGugCa -3' miRNA: 3'- gaAGaaCGGCGUCCUGa---GC---UGCugGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 92535 | 0.66 | 0.964373 |
Target: 5'- -aUCUacccgGCCGCGGcGGCcgCGGCGACg- -3' miRNA: 3'- gaAGAa----CGGCGUC-CUGa-GCUGCUGga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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