miRNA display CGI


Results 61 - 80 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9234 5' -55.1 NC_002512.2 + 219126 0.66 0.973175
Target:  5'- -----cGCgGCGGGGC-CGACGACg- -3'
miRNA:   3'- gaagaaCGgCGUCCUGaGCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 34623 0.66 0.973175
Target:  5'- aCUUCgagUGucCCGCcuGugUCGACGAUCa -3'
miRNA:   3'- -GAAGa--AC--GGCGucCugAGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 35311 0.67 0.945539
Target:  5'- gCUUCuUUGCuaCGCGacGGACaCGGCGACCg -3'
miRNA:   3'- -GAAG-AACG--GCGU--CCUGaGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 176763 0.67 0.945539
Target:  5'- gCUUCggacGCCuGCAGGGCUCGG-GACa- -3'
miRNA:   3'- -GAAGaa--CGG-CGUCCUGAGCUgCUGga -5'
9234 5' -55.1 NC_002512.2 + 145249 0.67 0.941112
Target:  5'- aCUUCcuggGCCGCcgccuGGA--CGACGACCUg -3'
miRNA:   3'- -GAAGaa--CGGCGu----CCUgaGCUGCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 194387 0.74 0.674483
Target:  5'- -----cGCUGCAGGACUUcugGACGGCCg -3'
miRNA:   3'- gaagaaCGGCGUCCUGAG---CUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 146739 0.72 0.742815
Target:  5'- -----gGCCGCcGGGCcCGACGACCUc -3'
miRNA:   3'- gaagaaCGGCGuCCUGaGCUGCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 149227 0.72 0.761634
Target:  5'- -----cGCCGCGGGAC-CGACgGACCc -3'
miRNA:   3'- gaagaaCGGCGUCCUGaGCUG-CUGGa -5'
9234 5' -55.1 NC_002512.2 + 96227 0.71 0.806609
Target:  5'- -----gGCCGCGGcGGCggCGGCGACCg -3'
miRNA:   3'- gaagaaCGGCGUC-CUGa-GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 92228 0.71 0.823597
Target:  5'- gUUCgUGCCcgacgacCGGGACUCGgACGACCg -3'
miRNA:   3'- gAAGaACGGc------GUCCUGAGC-UGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 103309 0.7 0.855516
Target:  5'- -----cGUCGUAGGACagGACGGCCg -3'
miRNA:   3'- gaagaaCGGCGUCCUGagCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 213283 0.7 0.855516
Target:  5'- gCUUCaucaGCCGCGuGGC-CGACGACCUc -3'
miRNA:   3'- -GAAGaa--CGGCGUcCUGaGCUGCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 59479 0.69 0.884346
Target:  5'- --cCUcGCCaGCGGGuCUCGAgCGGCCUg -3'
miRNA:   3'- gaaGAaCGG-CGUCCuGAGCU-GCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 167749 0.69 0.89103
Target:  5'- -----aGCUGCcGGGCgUCGGCGACCg -3'
miRNA:   3'- gaagaaCGGCGuCCUG-AGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 90655 0.69 0.903742
Target:  5'- -----gGCCGCGgucucGGAgUCGGCGGCCg -3'
miRNA:   3'- gaagaaCGGCGU-----CCUgAGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 94516 0.68 0.92058
Target:  5'- uCUUCgaacccGCC-CAGGACgaagcggUCGACGGCCa -3'
miRNA:   3'- -GAAGaa----CGGcGUCCUG-------AGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 98166 0.68 0.921127
Target:  5'- -----cGCCGCGgucuGGACgggcgCGGCGACCg -3'
miRNA:   3'- gaagaaCGGCGU----CCUGa----GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 158978 0.68 0.926466
Target:  5'- gUUCggcgGCCacgGCGGGGCggaggCGGCGGCCc -3'
miRNA:   3'- gAAGaa--CGG---CGUCCUGa----GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 188634 0.68 0.931576
Target:  5'- -cUCggGCCGCaAGGGCgccggcggcggCGGCGGCCc -3'
miRNA:   3'- gaAGaaCGGCG-UCCUGa----------GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 101698 0.68 0.936458
Target:  5'- -gUCccGCCgGCGGcccGCUCGGCGACCUc -3'
miRNA:   3'- gaAGaaCGG-CGUCc--UGAGCUGCUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.