miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9235 5' -60.2 NC_002512.2 + 103264 0.66 0.826758
Target:  5'- gCUgGUCCUUGGUguagaCCACGUAGGacccGCUGa -3'
miRNA:   3'- gGA-CGGGGACCA-----GGUGCAUCC----CGACa -5'
9235 5' -60.2 NC_002512.2 + 185480 0.66 0.81045
Target:  5'- uCCUGCCgCCgcaGGUCauggcgCACGccGGGCUGc -3'
miRNA:   3'- -GGACGG-GGa--CCAG------GUGCauCCCGACa -5'
9235 5' -60.2 NC_002512.2 + 197705 0.66 0.802075
Target:  5'- gCCUGCCCaUGGcCCGCGaccccAGGGUgcgGg -3'
miRNA:   3'- -GGACGGGgACCaGGUGCa----UCCCGa--Ca -5'
9235 5' -60.2 NC_002512.2 + 135661 0.67 0.784918
Target:  5'- cCCgugGUgaUCCUGGUCguccuCGUGGGGCUGc -3'
miRNA:   3'- -GGa--CG--GGGACCAGgu---GCAUCCCGACa -5'
9235 5' -60.2 NC_002512.2 + 2677 0.67 0.776151
Target:  5'- uCCgccGCCuCCUGGUCCGCGcgcGGGaGCg-- -3'
miRNA:   3'- -GGa--CGG-GGACCAGGUGCa--UCC-CGaca -5'
9235 5' -60.2 NC_002512.2 + 67489 0.67 0.767269
Target:  5'- cCCU-CCUC-GGUCgGCGUcuuGGGGCUGg -3'
miRNA:   3'- -GGAcGGGGaCCAGgUGCA---UCCCGACa -5'
9235 5' -60.2 NC_002512.2 + 129754 0.67 0.767269
Target:  5'- aCgUGCCuCCUGGUCCGCcUAGaGGacCUGg -3'
miRNA:   3'- -GgACGG-GGACCAGGUGcAUC-CC--GACa -5'
9235 5' -60.2 NC_002512.2 + 92443 0.68 0.74369
Target:  5'- uCCUGUCCCugagcgaacUGGcCCACGUGGuguacgagacgagccGGCUGc -3'
miRNA:   3'- -GGACGGGG---------ACCaGGUGCAUC---------------CCGACa -5'
9235 5' -60.2 NC_002512.2 + 187138 0.69 0.673806
Target:  5'- gCUGCCCCUGuUCCugGggucGGGgaGg -3'
miRNA:   3'- gGACGGGGACcAGGugCau--CCCgaCa -5'
9235 5' -60.2 NC_002512.2 + 95651 0.69 0.664166
Target:  5'- gUCUGCCUgaGGaggaaCGcCGUGGGGCUGUa -3'
miRNA:   3'- -GGACGGGgaCCag---GU-GCAUCCCGACA- -5'
9235 5' -60.2 NC_002512.2 + 93257 0.69 0.635137
Target:  5'- gCUGCCCCUGuccaaggCCACGcuggAGGGCg-- -3'
miRNA:   3'- gGACGGGGACca-----GGUGCa---UCCCGaca -5'
9235 5' -60.2 NC_002512.2 + 9436 0.71 0.558095
Target:  5'- aCUUGCCCgUGGagcCCACGUAGagcuccggcGGCUGg -3'
miRNA:   3'- -GGACGGGgACCa--GGUGCAUC---------CCGACa -5'
9235 5' -60.2 NC_002512.2 + 144512 0.73 0.431518
Target:  5'- gCUGCCCggaCUcGGUCCGCGUGGGcGCgGUc -3'
miRNA:   3'- gGACGGG---GA-CCAGGUGCAUCC-CGaCA- -5'
9235 5' -60.2 NC_002512.2 + 98754 0.74 0.367119
Target:  5'- cCCUGCCCCgccaucgGGUCCugGccgucggGGGGCa-- -3'
miRNA:   3'- -GGACGGGGa------CCAGGugCa------UCCCGaca -5'
9235 5' -60.2 NC_002512.2 + 107636 0.78 0.220889
Target:  5'- gCUGCCCgUGGUUCGCGUGGuGGCUc- -3'
miRNA:   3'- gGACGGGgACCAGGUGCAUC-CCGAca -5'
9235 5' -60.2 NC_002512.2 + 42773 1.08 0.002234
Target:  5'- cCCUGCCCCUGGUCCACGUAGGGCUGUc -3'
miRNA:   3'- -GGACGGGGACCAGGUGCAUCCCGACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.