Results 41 - 49 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9243 | 3' | -60.4 | NC_002512.2 | + | 34991 | 0.71 | 0.576471 |
Target: 5'- gCGUCCCgCGGAGGagaagggcaCCaGGGCCagGUGGg -3' miRNA: 3'- -GCAGGG-GCCUCUg--------GGaCCUGGa-CACC- -5' |
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9243 | 3' | -60.4 | NC_002512.2 | + | 116391 | 0.72 | 0.529894 |
Target: 5'- gGUCCCCGGGGcgggucGCCCUGacgcCCUcGUGGu -3' miRNA: 3'- gCAGGGGCCUC------UGGGACcu--GGA-CACC- -5' |
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9243 | 3' | -60.4 | NC_002512.2 | + | 214857 | 0.72 | 0.520736 |
Target: 5'- ---aCCUGGAGGCCCaGGACCUGg-- -3' miRNA: 3'- gcagGGGCCUCUGGGaCCUGGACacc -5' |
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9243 | 3' | -60.4 | NC_002512.2 | + | 115747 | 0.72 | 0.520736 |
Target: 5'- uCGUCCucugCCGGcuGCuCCUGGACCgGUGGc -3' miRNA: 3'- -GCAGG----GGCCucUG-GGACCUGGaCACC- -5' |
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9243 | 3' | -60.4 | NC_002512.2 | + | 208026 | 0.72 | 0.51164 |
Target: 5'- aGUCggggCGGAGACCCUGGcCCggGUGGu -3' miRNA: 3'- gCAGgg--GCCUCUGGGACCuGGa-CACC- -5' |
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9243 | 3' | -60.4 | NC_002512.2 | + | 49966 | 0.72 | 0.50261 |
Target: 5'- aGUgCCUGGGGAUCCUGGACUUccUGGc -3' miRNA: 3'- gCAgGGGCCUCUGGGACCUGGAc-ACC- -5' |
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9243 | 3' | -60.4 | NC_002512.2 | + | 10333 | 0.74 | 0.441556 |
Target: 5'- aCGUCCCCGGcgaAGACCCgu--CCgGUGGg -3' miRNA: 3'- -GCAGGGGCC---UCUGGGaccuGGaCACC- -5' |
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9243 | 3' | -60.4 | NC_002512.2 | + | 226299 | 0.87 | 0.065659 |
Target: 5'- uGUCCCC-GAGACCCccgGGGCCUGUGGg -3' miRNA: 3'- gCAGGGGcCUCUGGGa--CCUGGACACC- -5' |
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9243 | 3' | -60.4 | NC_002512.2 | + | 51659 | 1.09 | 0.002223 |
Target: 5'- cCGUCCCCGGAGACCCUGGACCUGUGGc -3' miRNA: 3'- -GCAGGGGCCUCUGGGACCUGGACACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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