miRNA display CGI


Results 41 - 60 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9246 5' -61.6 NC_002512.2 + 54053 0.66 0.756106
Target:  5'- gGCgAGGCGGCag-GAgGCgCCACGGAc -3'
miRNA:   3'- gCG-UCCGCCGggaCUgCG-GGUGCUUc -5'
9246 5' -61.6 NC_002512.2 + 155384 0.66 0.756106
Target:  5'- gGC-GGCGGCgCCggcgGGCGaUCGCGGAGg -3'
miRNA:   3'- gCGuCCGCCG-GGa---CUGCgGGUGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 33818 0.66 0.756106
Target:  5'- aGCAGGgcgaaGGCCCcgGugGCC-ACGAu- -3'
miRNA:   3'- gCGUCCg----CCGGGa-CugCGGgUGCUuc -5'
9246 5' -61.6 NC_002512.2 + 127422 0.66 0.755208
Target:  5'- gCGaCGGGCGcGCCCUccuccgcGACGCCaUGCGGGu -3'
miRNA:   3'- -GC-GUCCGC-CGGGA-------CUGCGG-GUGCUUc -5'
9246 5' -61.6 NC_002512.2 + 43369 0.66 0.747087
Target:  5'- aCGCAGaggucgacGCuGGCCCgGACGgCCGCGuAGu -3'
miRNA:   3'- -GCGUC--------CG-CCGGGaCUGCgGGUGCuUC- -5'
9246 5' -61.6 NC_002512.2 + 17530 0.66 0.747087
Target:  5'- gCGUAGGCGGCCagcuCGCuCUugGAc- -3'
miRNA:   3'- -GCGUCCGCCGGgacuGCG-GGugCUuc -5'
9246 5' -61.6 NC_002512.2 + 94755 0.66 0.747087
Target:  5'- --aGGGCGGCCCg---GCCCuCGGAGc -3'
miRNA:   3'- gcgUCCGCCGGGacugCGGGuGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 56095 0.66 0.747087
Target:  5'- aGCuggaAGGCGGCCUUGuccucgUGCCCGgGGAc -3'
miRNA:   3'- gCG----UCCGCCGGGACu-----GCGGGUgCUUc -5'
9246 5' -61.6 NC_002512.2 + 97168 0.66 0.747087
Target:  5'- uGCGGcaGCGGgCCgagGAucuCGCCCACGAc- -3'
miRNA:   3'- gCGUC--CGCCgGGa--CU---GCGGGUGCUuc -5'
9246 5' -61.6 NC_002512.2 + 119668 0.66 0.747087
Target:  5'- cCGC-GGCGGCCCUcauuaagcGACaCCCGCa--- -3'
miRNA:   3'- -GCGuCCGCCGGGA--------CUGcGGGUGcuuc -5'
9246 5' -61.6 NC_002512.2 + 122101 0.66 0.747087
Target:  5'- aCGCgAGGuCGGCgCUGACGUcggCCGCGcuGg -3'
miRNA:   3'- -GCG-UCC-GCCGgGACUGCG---GGUGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 101655 0.66 0.747087
Target:  5'- aGCGcGGCGGCCgCgGACGCCgGgcCGAu- -3'
miRNA:   3'- gCGU-CCGCCGG-GaCUGCGGgU--GCUuc -5'
9246 5' -61.6 NC_002512.2 + 102127 0.66 0.747087
Target:  5'- uCGgAGGgGGaCCCUGGcCGUCUACGGc- -3'
miRNA:   3'- -GCgUCCgCC-GGGACU-GCGGGUGCUuc -5'
9246 5' -61.6 NC_002512.2 + 15732 0.67 0.737979
Target:  5'- aCGUAGG-GGuCCCgguaGAUGCCguCGAAGg -3'
miRNA:   3'- -GCGUCCgCC-GGGa---CUGCGGguGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 60310 0.67 0.737979
Target:  5'- uCGUAccuGGCGGaCgCggaGACGCCgGCGAAGg -3'
miRNA:   3'- -GCGU---CCGCC-GgGa--CUGCGGgUGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 129970 0.67 0.737979
Target:  5'- cCGCccuucGGCgGGCCCccGGCGCCCuCGAc- -3'
miRNA:   3'- -GCGu----CCG-CCGGGa-CUGCGGGuGCUuc -5'
9246 5' -61.6 NC_002512.2 + 184594 0.67 0.737979
Target:  5'- gGC-GGCGGUCCgucCGaCCCGCGAGa -3'
miRNA:   3'- gCGuCCGCCGGGacuGC-GGGUGCUUc -5'
9246 5' -61.6 NC_002512.2 + 132993 0.67 0.737979
Target:  5'- gCGcCAGGaCGGgCCaUGGcCGCCgACGGAGa -3'
miRNA:   3'- -GC-GUCC-GCCgGG-ACU-GCGGgUGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 19372 0.67 0.737979
Target:  5'- gGCucGGCGGCCUc-GCGCUCGCGucGg -3'
miRNA:   3'- gCGu-CCGCCGGGacUGCGGGUGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 19891 0.67 0.737979
Target:  5'- cCGCAGGCGGUCgCgGAgGaacCCCGgGAAGc -3'
miRNA:   3'- -GCGUCCGCCGG-GaCUgC---GGGUgCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.