miRNA display CGI


Results 21 - 40 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9246 5' -61.6 NC_002512.2 + 17530 0.66 0.747087
Target:  5'- gCGUAGGCGGCCagcuCGCuCUugGAc- -3'
miRNA:   3'- -GCGUCCGCCGGgacuGCG-GGugCUuc -5'
9246 5' -61.6 NC_002512.2 + 17898 0.66 0.765029
Target:  5'- gGCGgcGGCGGCCCcgaggacGACGgCCGCGu-- -3'
miRNA:   3'- gCGU--CCGCCGGGa------CUGCgGGUGCuuc -5'
9246 5' -61.6 NC_002512.2 + 18096 0.66 0.773848
Target:  5'- gGCGGGaCGGCCCccGCGgCCACccGGg -3'
miRNA:   3'- gCGUCC-GCCGGGacUGCgGGUGcuUC- -5'
9246 5' -61.6 NC_002512.2 + 18915 0.66 0.772971
Target:  5'- aCGCAGGCgcgacacagGGCCCgGACGaCCUcguuggccucgggGCGGAc -3'
miRNA:   3'- -GCGUCCG---------CCGGGaCUGC-GGG-------------UGCUUc -5'
9246 5' -61.6 NC_002512.2 + 19372 0.67 0.737979
Target:  5'- gGCucGGCGGCCUc-GCGCUCGCGucGg -3'
miRNA:   3'- gCGu-CCGCCGGGacUGCGGGUGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 19891 0.67 0.737979
Target:  5'- cCGCAGGCGGUCgCgGAgGaacCCCGgGAAGc -3'
miRNA:   3'- -GCGUCCGCCGG-GaCUgC---GGGUgCUUC- -5'
9246 5' -61.6 NC_002512.2 + 20688 0.71 0.48443
Target:  5'- cCGCAGGCGccGCUCgGucuccuCGUCCACGAGGa -3'
miRNA:   3'- -GCGUCCGC--CGGGaCu-----GCGGGUGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 22992 0.71 0.502392
Target:  5'- aCGCGGGCGGCgCUGGugaccuaccCGUCgGCGAGc -3'
miRNA:   3'- -GCGUCCGCCGgGACU---------GCGGgUGCUUc -5'
9246 5' -61.6 NC_002512.2 + 23887 0.67 0.695159
Target:  5'- aGCAGGCGGCgCUGAaGCUgaucaagugcaacgaCGCGAc- -3'
miRNA:   3'- gCGUCCGCCGgGACUgCGG---------------GUGCUuc -5'
9246 5' -61.6 NC_002512.2 + 23935 0.7 0.520639
Target:  5'- aCGCGGGCGaCCUgaGGCGCCgCGCGAc- -3'
miRNA:   3'- -GCGUCCGCcGGGa-CUGCGG-GUGCUuc -5'
9246 5' -61.6 NC_002512.2 + 26715 0.66 0.773848
Target:  5'- gGCuGGCGuCCCUGAUGUgCGCGucGc -3'
miRNA:   3'- gCGuCCGCcGGGACUGCGgGUGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 27593 0.68 0.672383
Target:  5'- aGCGcGGCGGCac-GGCGCCCcggucccacagcGCGGAGa -3'
miRNA:   3'- gCGU-CCGCCGggaCUGCGGG------------UGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 27753 0.67 0.691379
Target:  5'- cCGCGgcGGCGGCCgaGACcggcgccaccaGCUgACGAGGa -3'
miRNA:   3'- -GCGU--CCGCCGGgaCUG-----------CGGgUGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 29174 0.66 0.773848
Target:  5'- cCGcCGGGCGGCagCCcGACGCCaCcCGAGa -3'
miRNA:   3'- -GC-GUCCGCCG--GGaCUGCGG-GuGCUUc -5'
9246 5' -61.6 NC_002512.2 + 30422 0.73 0.368648
Target:  5'- aCGCGGGCgucgucgcGGCCCUGAacgcgggccUGCCCAUGGc- -3'
miRNA:   3'- -GCGUCCG--------CCGGGACU---------GCGGGUGCUuc -5'
9246 5' -61.6 NC_002512.2 + 31045 0.77 0.213101
Target:  5'- aGCAGGCGGCgCUGAuCGCCaUGCGAAa -3'
miRNA:   3'- gCGUCCGCCGgGACU-GCGG-GUGCUUc -5'
9246 5' -61.6 NC_002512.2 + 32087 0.66 0.791146
Target:  5'- uCGCcgauGGCGGCCCgGGUGUCCucgcgguCGAGGu -3'
miRNA:   3'- -GCGu---CCGCCGGGaCUGCGGGu------GCUUC- -5'
9246 5' -61.6 NC_002512.2 + 32690 0.66 0.782556
Target:  5'- cCGUAGaCGGCCCcGAgcggGUCCAUGAGGa -3'
miRNA:   3'- -GCGUCcGCCGGGaCUg---CGGGUGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 33818 0.66 0.756106
Target:  5'- aGCAGGgcgaaGGCCCcgGugGCC-ACGAu- -3'
miRNA:   3'- gCGUCCg----CCGGGa-CugCGGgUGCUuc -5'
9246 5' -61.6 NC_002512.2 + 34573 0.68 0.680949
Target:  5'- uCGUAGGCGcaccugagcucgcGCCCUucGGCGCCggccccCGCGggGa -3'
miRNA:   3'- -GCGUCCGC-------------CGGGA--CUGCGG------GUGCuuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.