miRNA display CGI


Results 1 - 20 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9246 5' -61.6 NC_002512.2 + 192 0.66 0.765029
Target:  5'- gCGUGGGCuGCCCUGGCcCCC-CGucGc -3'
miRNA:   3'- -GCGUCCGcCGGGACUGcGGGuGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 2299 0.68 0.681899
Target:  5'- uGCGGGUggcggGGCUCUGcuGCGCCgGCGGu- -3'
miRNA:   3'- gCGUCCG-----CCGGGAC--UGCGGgUGCUuc -5'
9246 5' -61.6 NC_002512.2 + 2446 0.69 0.585309
Target:  5'- gGCAGcgcgaaggugaccGCGGCCC--GCGCCCGCGcgcGAGa -3'
miRNA:   3'- gCGUC-------------CGCCGGGacUGCGGGUGC---UUC- -5'
9246 5' -61.6 NC_002512.2 + 2824 0.68 0.672383
Target:  5'- gCGCGGGCgcgGGCCCgGACGaCgGCGGGc -3'
miRNA:   3'- -GCGUCCG---CCGGGaCUGCgGgUGCUUc -5'
9246 5' -61.6 NC_002512.2 + 3201 0.69 0.605351
Target:  5'- cCGCGGGCgacGGCCC-GGCGCUCA-GAGa -3'
miRNA:   3'- -GCGUCCG---CCGGGaCUGCGGGUgCUUc -5'
9246 5' -61.6 NC_002512.2 + 4602 0.67 0.728791
Target:  5'- cCGCGGGCcGCgagacggacgCCgagGACGCCCuccugGCGGAGa -3'
miRNA:   3'- -GCGUCCGcCG----------GGa--CUGCGGG-----UGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 6313 0.71 0.502392
Target:  5'- aCGUcgAGGUGGCCgc--CGCCCGCGggGg -3'
miRNA:   3'- -GCG--UCCGCCGGgacuGCGGGUGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 7394 0.73 0.39977
Target:  5'- gCGCagaAGGCGGCCaccgccacgUUGACGaCCGCGAGGg -3'
miRNA:   3'- -GCG---UCCGCCGG---------GACUGCgGGUGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 9228 0.67 0.728791
Target:  5'- aCGC-GGCGGgCCaggUGGCGCUCGCGc-- -3'
miRNA:   3'- -GCGuCCGCCgGG---ACUGCGGGUGCuuc -5'
9246 5' -61.6 NC_002512.2 + 9423 0.69 0.614925
Target:  5'- aCGUAGGCGaagaacuuGCCCgUGGaGCCCACGuAGa -3'
miRNA:   3'- -GCGUCCGC--------CGGG-ACUgCGGGUGCuUC- -5'
9246 5' -61.6 NC_002512.2 + 9776 0.71 0.48443
Target:  5'- cCGCGuGGCGGCUCacgGACGCCUcgaccuccuCGAAGg -3'
miRNA:   3'- -GCGU-CCGCCGGGa--CUGCGGGu--------GCUUC- -5'
9246 5' -61.6 NC_002512.2 + 10789 0.68 0.681899
Target:  5'- gCGUAGuaGCGGCCgaaGACGUCCAUGAGc -3'
miRNA:   3'- -GCGUC--CGCCGGga-CUGCGGGUGCUUc -5'
9246 5' -61.6 NC_002512.2 + 11670 0.67 0.700815
Target:  5'- cCGCGGcccgccGCGGCCCgaggcgGGgGCCCgagggGCGAGGc -3'
miRNA:   3'- -GCGUC------CGCCGGGa-----CUgCGGG-----UGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 12904 0.67 0.704576
Target:  5'- gGCGGGCGcagcacauggagugcGCCCgGGCGuuCCgCGCGAAGa -3'
miRNA:   3'- gCGUCCGC---------------CGGGaCUGC--GG-GUGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 13459 0.69 0.586261
Target:  5'- gGC-GGCGGCgagCCUGGCGUCCcCGGAc -3'
miRNA:   3'- gCGuCCGCCG---GGACUGCGGGuGCUUc -5'
9246 5' -61.6 NC_002512.2 + 13632 0.66 0.763252
Target:  5'- uGCGGGCGGCgcaCCUGAUGacgaccgucucgCCGCGGc- -3'
miRNA:   3'- gCGUCCGCCG---GGACUGCg-----------GGUGCUuc -5'
9246 5' -61.6 NC_002512.2 + 15253 0.75 0.291941
Target:  5'- uGCgAGGCGGCCC--GCGucCCCGCGAGGg -3'
miRNA:   3'- gCG-UCCGCCGGGacUGC--GGGUGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 15649 0.79 0.175537
Target:  5'- cCGCGGGCGGCgagccgacgagccgCCUGACGUCC-CGggGc -3'
miRNA:   3'- -GCGUCCGCCG--------------GGACUGCGGGuGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 15732 0.67 0.737979
Target:  5'- aCGUAGG-GGuCCCgguaGAUGCCguCGAAGg -3'
miRNA:   3'- -GCGUCCgCC-GGGa---CUGCGGguGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 16140 0.67 0.728791
Target:  5'- uGcCGGGCGGCCU--GCGCCCGguCGGu- -3'
miRNA:   3'- gC-GUCCGCCGGGacUGCGGGU--GCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.