miRNA display CGI


Results 1 - 20 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9246 5' -61.6 NC_002512.2 + 52876 0.96 0.011882
Target:  5'- gCGCAGGCGGCCCUGACGCC-ACGAAGu -3'
miRNA:   3'- -GCGUCCGCCGGGACUGCGGgUGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 101752 0.72 0.440949
Target:  5'- aGguGGUGGCCCgGGCGCuCCGuCGgcGg -3'
miRNA:   3'- gCguCCGCCGGGaCUGCG-GGU-GCuuC- -5'
9246 5' -61.6 NC_002512.2 + 99103 0.72 0.440949
Target:  5'- gCGCGucGGCGGCCCUccucGugGUCCGCGc-- -3'
miRNA:   3'- -GCGU--CCGCCGGGA----CugCGGGUGCuuc -5'
9246 5' -61.6 NC_002512.2 + 82709 0.66 0.791146
Target:  5'- gCGCGGcGCgGGCCCgcguuccGGCGUCUaauacuGCGAGGg -3'
miRNA:   3'- -GCGUC-CG-CCGGGa------CUGCGGG------UGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 31045 0.77 0.213101
Target:  5'- aGCAGGCGGCgCUGAuCGCCaUGCGAAa -3'
miRNA:   3'- gCGUCCGCCGgGACU-GCGG-GUGCUUc -5'
9246 5' -61.6 NC_002512.2 + 152690 0.77 0.213101
Target:  5'- aCGCAGGgGGCCUccucGAuCGUCCGCGAAGa -3'
miRNA:   3'- -GCGUCCgCCGGGa---CU-GCGGGUGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 15253 0.75 0.291941
Target:  5'- uGCgAGGCGGCCC--GCGucCCCGCGAGGg -3'
miRNA:   3'- gCG-UCCGCCGGGacUGC--GGGUGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 80730 0.74 0.325171
Target:  5'- cCGCGGGCGGCaCC-GGC-CCCGCGgcGg -3'
miRNA:   3'- -GCGUCCGCCG-GGaCUGcGGGUGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 125005 0.73 0.361132
Target:  5'- uGCAucGG-GGCCaggGACGCCCGCGggGc -3'
miRNA:   3'- gCGU--CCgCCGGga-CUGCGGGUGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 130166 0.72 0.43252
Target:  5'- gGCGGGcCGGCCCgcgacGGCGCggACGAGGa -3'
miRNA:   3'- gCGUCC-GCCGGGa----CUGCGggUGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 7394 0.73 0.39977
Target:  5'- gCGCagaAGGCGGCCaccgccacgUUGACGaCCGCGAGGg -3'
miRNA:   3'- -GCG---UCCGCCGG---------GACUGCgGGUGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 118079 0.74 0.346421
Target:  5'- aGgGGGCGGCUCcGGCGCCgGCGgcGa -3'
miRNA:   3'- gCgUCCGCCGGGaCUGCGGgUGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 15649 0.79 0.175537
Target:  5'- cCGCGGGCGGCgagccgacgagccgCCUGACGUCC-CGggGc -3'
miRNA:   3'- -GCGUCCGCCG--------------GGACUGCGGGuGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 133935 0.72 0.407809
Target:  5'- gGC-GGCGGCCC-GACGgCCCGCGu-- -3'
miRNA:   3'- gCGuCCGCCGGGaCUGC-GGGUGCuuc -5'
9246 5' -61.6 NC_002512.2 + 114802 0.78 0.198784
Target:  5'- aCGCGGGUGGCCa-GGCGCCgCGCGAc- -3'
miRNA:   3'- -GCGUCCGCCGGgaCUGCGG-GUGCUuc -5'
9246 5' -61.6 NC_002512.2 + 96310 0.74 0.339229
Target:  5'- cCGCGGGCGGgCCgGuCGCCgCACGAc- -3'
miRNA:   3'- -GCGUCCGCCgGGaCuGCGG-GUGCUuc -5'
9246 5' -61.6 NC_002512.2 + 36976 0.72 0.415948
Target:  5'- uCGgAGGCGGCUCUGGacCGCC-GCGGAGc -3'
miRNA:   3'- -GCgUCCGCCGGGACU--GCGGgUGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 36878 0.72 0.440949
Target:  5'- uGCAGGUGGgCagggcGGCGCCCGCGGu- -3'
miRNA:   3'- gCGUCCGCCgGga---CUGCGGGUGCUuc -5'
9246 5' -61.6 NC_002512.2 + 116400 0.78 0.203461
Target:  5'- gGCGGGUcGCCCUGACGCCCuCGuGGu -3'
miRNA:   3'- gCGUCCGcCGGGACUGCGGGuGCuUC- -5'
9246 5' -61.6 NC_002512.2 + 128815 0.76 0.267315
Target:  5'- cCGCGGGCgGGCCCUcGACGCCgGguucgcCGggGa -3'
miRNA:   3'- -GCGUCCG-CCGGGA-CUGCGGgU------GCuuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.