miRNA display CGI


Results 1 - 20 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9246 5' -61.6 NC_002512.2 + 111108 0.66 0.791146
Target:  5'- cCGCccGGCGGCg--GAggcgcCGCCCGCGggGu -3'
miRNA:   3'- -GCGu-CCGCCGggaCU-----GCGGGUGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 95572 0.66 0.765029
Target:  5'- cCGUcGGCgccGGCCCcggcGACGUCCuCGAAGa -3'
miRNA:   3'- -GCGuCCG---CCGGGa---CUGCGGGuGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 197732 0.66 0.765029
Target:  5'- uGCGGGaGGCCCUGgagaagauGCGCgCCAUGu-- -3'
miRNA:   3'- gCGUCCgCCGGGAC--------UGCG-GGUGCuuc -5'
9246 5' -61.6 NC_002512.2 + 106984 0.66 0.756106
Target:  5'- cCGUAGaaGGCCggGACGCCCGggcCGggGu -3'
miRNA:   3'- -GCGUCcgCCGGgaCUGCGGGU---GCuuC- -5'
9246 5' -61.6 NC_002512.2 + 95641 0.66 0.756106
Target:  5'- aGgGGGCGGCUCgGcCGCCCcCGGc- -3'
miRNA:   3'- gCgUCCGCCGGGaCuGCGGGuGCUuc -5'
9246 5' -61.6 NC_002512.2 + 100680 0.66 0.756106
Target:  5'- aGUAGGUGcuGCUCUGcaGCGCCCGCa--- -3'
miRNA:   3'- gCGUCCGC--CGGGAC--UGCGGGUGcuuc -5'
9246 5' -61.6 NC_002512.2 + 119668 0.66 0.747087
Target:  5'- cCGC-GGCGGCCCUcauuaagcGACaCCCGCa--- -3'
miRNA:   3'- -GCGuCCGCCGGGA--------CUGcGGGUGcuuc -5'
9246 5' -61.6 NC_002512.2 + 122101 0.66 0.747087
Target:  5'- aCGCgAGGuCGGCgCUGACGUcggCCGCGcuGg -3'
miRNA:   3'- -GCG-UCC-GCCGgGACUGCG---GGUGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 56095 0.66 0.747087
Target:  5'- aGCuggaAGGCGGCCUUGuccucgUGCCCGgGGAc -3'
miRNA:   3'- gCG----UCCGCCGGGACu-----GCGGGUgCUUc -5'
9246 5' -61.6 NC_002512.2 + 120879 0.66 0.765029
Target:  5'- cCGCAGGaCGacGCCgCcGGCGCCgACGAGc -3'
miRNA:   3'- -GCGUCC-GC--CGG-GaCUGCGGgUGCUUc -5'
9246 5' -61.6 NC_002512.2 + 227754 0.66 0.765029
Target:  5'- gGgAGGCGacgaccgaacGCUC-GACGCCCGCGAc- -3'
miRNA:   3'- gCgUCCGC----------CGGGaCUGCGGGUGCUuc -5'
9246 5' -61.6 NC_002512.2 + 113726 0.66 0.772971
Target:  5'- aCGCGGGCGGCgaUCUGcgggccgaggugcGCGgUCAUGGAGc -3'
miRNA:   3'- -GCGUCCGCCG--GGAC-------------UGCgGGUGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 117824 0.66 0.791146
Target:  5'- uCGC-GGCGGaCC-GACGUCCugGAc- -3'
miRNA:   3'- -GCGuCCGCCgGGaCUGCGGGugCUuc -5'
9246 5' -61.6 NC_002512.2 + 213675 0.66 0.791146
Target:  5'- gCGgAGGgGaGCCCggcGuCGCCCGCGGu- -3'
miRNA:   3'- -GCgUCCgC-CGGGa--CuGCGGGUGCUuc -5'
9246 5' -61.6 NC_002512.2 + 211247 0.66 0.791146
Target:  5'- gCGUcgAGGCGGCCgUcGACGCCauguuCGAc- -3'
miRNA:   3'- -GCG--UCCGCCGGgA-CUGCGGgu---GCUuc -5'
9246 5' -61.6 NC_002512.2 + 113209 0.66 0.791146
Target:  5'- aGCGGGagccgGGUCCU--CGCCCGgGGAGa -3'
miRNA:   3'- gCGUCCg----CCGGGAcuGCGGGUgCUUC- -5'
9246 5' -61.6 NC_002512.2 + 148517 0.66 0.782556
Target:  5'- aGgAGGCGGCCgCcgccCGCCCcggccGCGAGGg -3'
miRNA:   3'- gCgUCCGCCGG-Gacu-GCGGG-----UGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 131303 0.66 0.773848
Target:  5'- uGCAGcGCGgacgacccgccGCCCgaGGCGCCCGcCGGAu -3'
miRNA:   3'- gCGUC-CGC-----------CGGGa-CUGCGGGU-GCUUc -5'
9246 5' -61.6 NC_002512.2 + 146598 0.66 0.773848
Target:  5'- aCGaacGGCGGCCCcaGACGCCUcugcugccgACGAu- -3'
miRNA:   3'- -GCgu-CCGCCGGGa-CUGCGGG---------UGCUuc -5'
9246 5' -61.6 NC_002512.2 + 119717 0.66 0.773848
Target:  5'- gGCcGGcCGGCCgUG-CGCCCGCa--- -3'
miRNA:   3'- gCGuCC-GCCGGgACuGCGGGUGcuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.