miRNA display CGI


Results 1 - 20 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9246 5' -61.6 NC_002512.2 + 52876 0.96 0.011882
Target:  5'- gCGCAGGCGGCCCUGACGCC-ACGAAGu -3'
miRNA:   3'- -GCGUCCGCCGGGACUGCGGgUGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 224255 0.81 0.120311
Target:  5'- gGCGGGuCGGCgCCcGACGCCCGCGAGa -3'
miRNA:   3'- gCGUCC-GCCG-GGaCUGCGGGUGCUUc -5'
9246 5' -61.6 NC_002512.2 + 194663 0.8 0.1426
Target:  5'- -uCGGGCGGUCCUGcACGCCCACGucGa -3'
miRNA:   3'- gcGUCCGCCGGGAC-UGCGGGUGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 15649 0.79 0.175537
Target:  5'- cCGCGGGCGGCgagccgacgagccgCCUGACGUCC-CGggGc -3'
miRNA:   3'- -GCGUCCGCCG--------------GGACUGCGGGuGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 114802 0.78 0.198784
Target:  5'- aCGCGGGUGGCCa-GGCGCCgCGCGAc- -3'
miRNA:   3'- -GCGUCCGCCGGgaCUGCGG-GUGCUuc -5'
9246 5' -61.6 NC_002512.2 + 116400 0.78 0.203461
Target:  5'- gGCGGGUcGCCCUGACGCCCuCGuGGu -3'
miRNA:   3'- gCGUCCGcCGGGACUGCGGGuGCuUC- -5'
9246 5' -61.6 NC_002512.2 + 225805 0.77 0.21261
Target:  5'- cCGCGGGCGGCCggGugGCCUgggaccucgagccGCGggGg -3'
miRNA:   3'- -GCGUCCGCCGGgaCugCGGG-------------UGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 31045 0.77 0.213101
Target:  5'- aGCAGGCGGCgCUGAuCGCCaUGCGAAa -3'
miRNA:   3'- gCGUCCGCCGgGACU-GCGG-GUGCUUc -5'
9246 5' -61.6 NC_002512.2 + 152690 0.77 0.213101
Target:  5'- aCGCAGGgGGCCUccucGAuCGUCCGCGAAGa -3'
miRNA:   3'- -GCGUCCgCCGGGa---CU-GCGGGUGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 219398 0.76 0.244394
Target:  5'- cCGCuGGuCGGCCCgccgcGACGCCCACGcccGGGg -3'
miRNA:   3'- -GCGuCC-GCCGGGa----CUGCGGGUGC---UUC- -5'
9246 5' -61.6 NC_002512.2 + 118368 0.76 0.249967
Target:  5'- uGCAGGaGGCCCUGACGCUccagugcagCACGAc- -3'
miRNA:   3'- gCGUCCgCCGGGACUGCGG---------GUGCUuc -5'
9246 5' -61.6 NC_002512.2 + 159002 0.76 0.255644
Target:  5'- gGC-GGCGGCCCcGGCGUCCGCGccGg -3'
miRNA:   3'- gCGuCCGCCGGGaCUGCGGGUGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 128815 0.76 0.267315
Target:  5'- cCGCGGGCgGGCCCUcGACGCCgGguucgcCGggGa -3'
miRNA:   3'- -GCGUCCG-CCGGGA-CUGCGGgU------GCuuC- -5'
9246 5' -61.6 NC_002512.2 + 219344 0.75 0.285622
Target:  5'- cCGCcGGCuGCCC-GGCGUCCGCGAGGu -3'
miRNA:   3'- -GCGuCCGcCGGGaCUGCGGGUGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 179309 0.75 0.291304
Target:  5'- cCGCGGGCGGCgaggcgggcagauCCUGcaGCGCCgCGCGAAa -3'
miRNA:   3'- -GCGUCCGCCG-------------GGAC--UGCGG-GUGCUUc -5'
9246 5' -61.6 NC_002512.2 + 15253 0.75 0.291941
Target:  5'- uGCgAGGCGGCCC--GCGucCCCGCGAGGg -3'
miRNA:   3'- gCG-UCCGCCGGGacUGC--GGGUGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 226908 0.75 0.298368
Target:  5'- aCGCGGGaGGCCaagGAgGCCCGCGAGa -3'
miRNA:   3'- -GCGUCCgCCGGga-CUgCGGGUGCUUc -5'
9246 5' -61.6 NC_002512.2 + 184759 0.75 0.304905
Target:  5'- gGCGGGCGGCCCgugGucguCGaCCC-CGAGGa -3'
miRNA:   3'- gCGUCCGCCGGGa--Cu---GC-GGGuGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 112925 0.74 0.318306
Target:  5'- gCGUcGGCGGCCCgGugGCgCGCGAGc -3'
miRNA:   3'- -GCGuCCGCCGGGaCugCGgGUGCUUc -5'
9246 5' -61.6 NC_002512.2 + 172648 0.74 0.325171
Target:  5'- gGCGGuaGCGGCCUgcgggGACGCCCGCGu-- -3'
miRNA:   3'- gCGUC--CGCCGGGa----CUGCGGGUGCuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.