miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9252 5' -65.7 NC_002512.2 + 55621 1.1 0.000844
Target:  5'- cCCCCGAGACCCCGGGACCCGGACCCGg -3'
miRNA:   3'- -GGGGCUCUGGGGCCCUGGGCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 226301 0.84 0.05177
Target:  5'- uCCCCGAGAcCCCCGGGGCCUGuGGgCCGu -3'
miRNA:   3'- -GGGGCUCU-GGGGCCCUGGGC-CUgGGC- -5'
9252 5' -65.7 NC_002512.2 + 149138 0.8 0.100985
Target:  5'- cCCCCGGGACCCgggaccgccgCGGGGCCggugccgcccgCGGGCCCGc -3'
miRNA:   3'- -GGGGCUCUGGG----------GCCCUGG-----------GCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 103497 0.8 0.103385
Target:  5'- gCCCGGGGCCCCGGGcgcucuCCCGGGCggCCa -3'
miRNA:   3'- gGGGCUCUGGGGCCCu-----GGGCCUG--GGc -5'
9252 5' -65.7 NC_002512.2 + 3524 0.8 0.105838
Target:  5'- aCCCGAG-CCCgCGGGGCCCGaaGCCCGg -3'
miRNA:   3'- gGGGCUCuGGG-GCCCUGGGCc-UGGGC- -5'
9252 5' -65.7 NC_002512.2 + 129568 0.8 0.108347
Target:  5'- gUCCCGAGGCgCCGGGACgUCGGcCCCGu -3'
miRNA:   3'- -GGGGCUCUGgGGCCCUG-GGCCuGGGC- -5'
9252 5' -65.7 NC_002512.2 + 79679 0.79 0.121745
Target:  5'- uCCCCGGcGGCCuCCGGGuuCCCGGAUCCc -3'
miRNA:   3'- -GGGGCU-CUGG-GGCCCu-GGGCCUGGGc -5'
9252 5' -65.7 NC_002512.2 + 124679 0.78 0.13667
Target:  5'- gCCagaCGGGACCUCGGGAUCCGGGCgCa -3'
miRNA:   3'- -GGg--GCUCUGGGGCCCUGGGCCUGgGc -5'
9252 5' -65.7 NC_002512.2 + 118649 0.78 0.143098
Target:  5'- gCCCGAcGCUCCGGGcGCCCGGccGCCCGu -3'
miRNA:   3'- gGGGCUcUGGGGCCC-UGGGCC--UGGGC- -5'
9252 5' -65.7 NC_002512.2 + 105654 0.77 0.15291
Target:  5'- aCUCCGAGuaccucaGCCCCGGGACCUGGAacaCGa -3'
miRNA:   3'- -GGGGCUC-------UGGGGCCCUGGGCCUgg-GC- -5'
9252 5' -65.7 NC_002512.2 + 51645 0.77 0.153259
Target:  5'- aCCCgGAGAccgcgccguCCCCGGaGACCCuGGACCUGu -3'
miRNA:   3'- -GGGgCUCU---------GGGGCC-CUGGG-CCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 221841 0.77 0.153259
Target:  5'- aCCCgCGGGggcGCCUCGGGACCgGGACCUc -3'
miRNA:   3'- -GGG-GCUC---UGGGGCCCUGGgCCUGGGc -5'
9252 5' -65.7 NC_002512.2 + 144695 0.77 0.153259
Target:  5'- aCCCGGcGACCCaCGGGACCCGucgcGCCUGg -3'
miRNA:   3'- gGGGCU-CUGGG-GCCCUGGGCc---UGGGC- -5'
9252 5' -65.7 NC_002512.2 + 72825 0.77 0.156789
Target:  5'- aCCCCG-GACCCCGGGACgcccgccuugCCGGGUCCu -3'
miRNA:   3'- -GGGGCuCUGGGGCCCUG----------GGCCUGGGc -5'
9252 5' -65.7 NC_002512.2 + 94657 0.77 0.160392
Target:  5'- gCCUCGAGGCggCCCGGGGCCgGGGggcccCCCGg -3'
miRNA:   3'- -GGGGCUCUG--GGGCCCUGGgCCU-----GGGC- -5'
9252 5' -65.7 NC_002512.2 + 126386 0.77 0.16407
Target:  5'- gCCCGGGagaGCgCCCGGGGCCCcGGGCgCCGu -3'
miRNA:   3'- gGGGCUC---UG-GGGCCCUGGG-CCUG-GGC- -5'
9252 5' -65.7 NC_002512.2 + 127625 0.76 0.175562
Target:  5'- -gCCGAGAUggacgacgCCC-GGACCCGGGCCCGg -3'
miRNA:   3'- ggGGCUCUG--------GGGcCCUGGGCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 7282 0.76 0.175562
Target:  5'- gCgCGAGGCCCCGGGGgCCGGACa-- -3'
miRNA:   3'- gGgGCUCUGGGGCCCUgGGCCUGggc -5'
9252 5' -65.7 NC_002512.2 + 105087 0.76 0.183616
Target:  5'- cUCCCG--GCUCCGucagcuGGACCCGGACCCGg -3'
miRNA:   3'- -GGGGCucUGGGGC------CCUGGGCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 149214 0.76 0.187765
Target:  5'- cCCCCGucgccgccGCCgCGGGACCgaCGGACCCGg -3'
miRNA:   3'- -GGGGCuc------UGGgGCCCUGG--GCCUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.