miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9252 5' -65.7 NC_002512.2 + 1590 0.67 0.610988
Target:  5'- uCCCCcc-GCCCCGGGuCCCGuccuCCCu -3'
miRNA:   3'- -GGGGcucUGGGGCCCuGGGCcu--GGGc -5'
9252 5' -65.7 NC_002512.2 + 1905 0.69 0.495371
Target:  5'- gCCCucGGCCCuCGGcGCCgGGGCCCu -3'
miRNA:   3'- gGGGcuCUGGG-GCCcUGGgCCUGGGc -5'
9252 5' -65.7 NC_002512.2 + 2329 0.72 0.320644
Target:  5'- gUCCgGAGGCCUCGGu-CgCGGACCCGc -3'
miRNA:   3'- -GGGgCUCUGGGGCCcuGgGCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 2518 0.68 0.529233
Target:  5'- cCCCCGAcgccggcGGCCCCGGGccuccUCCGu-CCCGu -3'
miRNA:   3'- -GGGGCU-------CUGGGGCCCu----GGGCcuGGGC- -5'
9252 5' -65.7 NC_002512.2 + 2782 0.73 0.294769
Target:  5'- cCCCCGucugagcccGACCCggccggcggccggCGGGACCCGGcgcgggcgcggGCCCGg -3'
miRNA:   3'- -GGGGCu--------CUGGG-------------GCCCUGGGCC-----------UGGGC- -5'
9252 5' -65.7 NC_002512.2 + 2985 0.69 0.478389
Target:  5'- cUCCUuGGcCCCCGcGuGGCCCGGuCCCGg -3'
miRNA:   3'- -GGGGcUCuGGGGC-C-CUGGGCCuGGGC- -5'
9252 5' -65.7 NC_002512.2 + 3396 0.66 0.638349
Target:  5'- aCCCGcGGCgaggggagcgCCCGGGcCCCGGccuccuCCCGc -3'
miRNA:   3'- gGGGCuCUG----------GGGCCCuGGGCCu-----GGGC- -5'
9252 5' -65.7 NC_002512.2 + 3524 0.8 0.105838
Target:  5'- aCCCGAG-CCCgCGGGGCCCGaaGCCCGg -3'
miRNA:   3'- gGGGCUCuGGG-GCCCUGGGCc-UGGGC- -5'
9252 5' -65.7 NC_002512.2 + 3570 0.7 0.435652
Target:  5'- gUCCCGAGccacggcccacagGCCCCGGGGguCUCGGggacaggcgcagaGCCCGc -3'
miRNA:   3'- -GGGGCUC-------------UGGGGCCCU--GGGCC-------------UGGGC- -5'
9252 5' -65.7 NC_002512.2 + 3712 0.66 0.647469
Target:  5'- aCCCGGucgcuCCCCGGG--UCGGACUCGu -3'
miRNA:   3'- gGGGCUcu---GGGGCCCugGGCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 4064 0.68 0.536287
Target:  5'- cCCCCGcggcucgaggucccAGGCCacCCGGccGCCCGcGGCCCGg -3'
miRNA:   3'- -GGGGC--------------UCUGG--GGCCc-UGGGC-CUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 4384 0.67 0.565706
Target:  5'- gCCCGGGACCCCcgcGGcGGCCCcguaGAUCgCGg -3'
miRNA:   3'- gGGGCUCUGGGG---CC-CUGGGc---CUGG-GC- -5'
9252 5' -65.7 NC_002512.2 + 4479 0.66 0.656579
Target:  5'- aCCCGAccccGACCCCGGcg-CCGucCCCGa -3'
miRNA:   3'- gGGGCU----CUGGGGCCcugGGCcuGGGC- -5'
9252 5' -65.7 NC_002512.2 + 4510 0.71 0.368659
Target:  5'- uCCCUcuccauguuGAGuUgCCGGGACCCGGACaCCa -3'
miRNA:   3'- -GGGG---------CUCuGgGGCCCUGGGCCUG-GGc -5'
9252 5' -65.7 NC_002512.2 + 5257 0.67 0.592802
Target:  5'- -gCCGAGGCCgCGGcggcGACCCcGAgCCCGg -3'
miRNA:   3'- ggGGCUCUGGgGCC----CUGGGcCU-GGGC- -5'
9252 5' -65.7 NC_002512.2 + 5358 0.66 0.647469
Target:  5'- cCCCCGGGACCUgUGGucCuCCGGcucuggcgcACCCGa -3'
miRNA:   3'- -GGGGCUCUGGG-GCCcuG-GGCC---------UGGGC- -5'
9252 5' -65.7 NC_002512.2 + 5852 0.72 0.320644
Target:  5'- uCCCCGGcGGCCCCGucGGAguCCCGGGCgUCGu -3'
miRNA:   3'- -GGGGCU-CUGGGGC--CCU--GGGCCUG-GGC- -5'
9252 5' -65.7 NC_002512.2 + 6096 0.66 0.620103
Target:  5'- gCCgCCGAcGuCCCCGGcGACguCCGGuCCCu -3'
miRNA:   3'- -GG-GGCU-CuGGGGCC-CUG--GGCCuGGGc -5'
9252 5' -65.7 NC_002512.2 + 6676 0.68 0.521338
Target:  5'- -gCCGGGacgcGCUCCGGGACgCCGucCCCGu -3'
miRNA:   3'- ggGGCUC----UGGGGCCCUG-GGCcuGGGC- -5'
9252 5' -65.7 NC_002512.2 + 6796 0.69 0.45347
Target:  5'- uCCCCGucGACgcagCCGcGGACCCGGGuCUCGg -3'
miRNA:   3'- -GGGGCu-CUGg---GGC-CCUGGGCCU-GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.