miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9256 5' -46.5 NC_002512.2 + 88946 0.76 0.968026
Target:  5'- cGGCGCGUCUCGuCCGUaucuggcucugcgUCUGGgucUCCg -3'
miRNA:   3'- -CUGUGCAGAGC-GGCA-------------AGAUUauaAGG- -5'
9256 5' -46.5 NC_002512.2 + 58760 1.15 0.01945
Target:  5'- gGACACGUCUCGCCGUUCUAAUAUUCCa -3'
miRNA:   3'- -CUGUGCAGAGCGGCAAGAUUAUAAGG- -5'
9256 5' -46.5 NC_002512.2 + 178761 0.66 0.999999
Target:  5'- -gUACGUCgCGUCGUUCUcGAUGUacUUCg -3'
miRNA:   3'- cuGUGCAGaGCGGCAAGA-UUAUA--AGG- -5'
9256 5' -46.5 NC_002512.2 + 156725 0.75 0.981424
Target:  5'- aGCugGUCUCGuCCGUcgUCUGGUAcUUCa -3'
miRNA:   3'- cUGugCAGAGC-GGCA--AGAUUAUaAGG- -5'
9256 5' -46.5 NC_002512.2 + 137837 0.7 0.999157
Target:  5'- aGCACGUCUCuCUGUUCUuaaauagGUUCUu -3'
miRNA:   3'- cUGUGCAGAGcGGCAAGAuua----UAAGG- -5'
9256 5' -46.5 NC_002512.2 + 176880 0.7 0.999157
Target:  5'- uGGCugGUgUUGUCGUg--GAUGUUCCc -3'
miRNA:   3'- -CUGugCAgAGCGGCAagaUUAUAAGG- -5'
9256 5' -46.5 NC_002512.2 + 139166 0.68 0.999939
Target:  5'- aGGC-CGUCUUGCCGcacUCUAGgg--CCa -3'
miRNA:   3'- -CUGuGCAGAGCGGCa--AGAUUauaaGG- -5'
9256 5' -46.5 NC_002512.2 + 210194 0.68 0.999939
Target:  5'- --uGCGUCcCGaCCG-UCUGAUcgUCCg -3'
miRNA:   3'- cugUGCAGaGC-GGCaAGAUUAuaAGG- -5'
9256 5' -46.5 NC_002512.2 + 76516 0.67 0.99999
Target:  5'- cGCACGUCcagUUGCCGg-CUGAcGUUCUg -3'
miRNA:   3'- cUGUGCAG---AGCGGCaaGAUUaUAAGG- -5'
9256 5' -46.5 NC_002512.2 + 176688 0.67 0.99999
Target:  5'- uGGCGCG--UCGCC-UUgUGGUGUUCCc -3'
miRNA:   3'- -CUGUGCagAGCGGcAAgAUUAUAAGG- -5'
9256 5' -46.5 NC_002512.2 + 212098 0.66 0.999998
Target:  5'- aGCGCGUgCUCGCCGa------GUUCCa -3'
miRNA:   3'- cUGUGCA-GAGCGGCaagauuaUAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.