miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9256 5' -46.5 NC_002512.2 + 13653 0.66 0.999995
Target:  5'- cGAC-CGUCUCGCCGcggCUccagcUCCc -3'
miRNA:   3'- -CUGuGCAGAGCGGCaa-GAuuauaAGG- -5'
9256 5' -46.5 NC_002512.2 + 66499 0.66 0.999997
Target:  5'- cGugACGuUUUCGCCcg--UGAUGUUCCa -3'
miRNA:   3'- -CugUGC-AGAGCGGcaagAUUAUAAGG- -5'
9256 5' -46.5 NC_002512.2 + 17309 0.66 0.999997
Target:  5'- -uCGCGUCgUCGCCGccgUCgucGUcgUCCc -3'
miRNA:   3'- cuGUGCAG-AGCGGCa--AGau-UAuaAGG- -5'
9256 5' -46.5 NC_002512.2 + 212098 0.66 0.999998
Target:  5'- aGCGCGUgCUCGCCGa------GUUCCa -3'
miRNA:   3'- cUGUGCA-GAGCGGCaagauuaUAAGG- -5'
9256 5' -46.5 NC_002512.2 + 186143 0.66 0.999998
Target:  5'- cGAUACGga-CGCCGUUCg-----UCCg -3'
miRNA:   3'- -CUGUGCagaGCGGCAAGauuauaAGG- -5'
9256 5' -46.5 NC_002512.2 + 38237 0.66 0.999998
Target:  5'- --gACGUCUcCGCCGUcCUGGc--UCCg -3'
miRNA:   3'- cugUGCAGA-GCGGCAaGAUUauaAGG- -5'
9256 5' -46.5 NC_002512.2 + 21909 0.66 0.999998
Target:  5'- aGCACGUCUCGUCGccgCUAcgGa--- -3'
miRNA:   3'- cUGUGCAGAGCGGCaa-GAUuaUaagg -5'
9256 5' -46.5 NC_002512.2 + 178761 0.66 0.999999
Target:  5'- -gUACGUCgCGUCGUUCUcGAUGUacUUCg -3'
miRNA:   3'- cuGUGCAGaGCGGCAAGA-UUAUA--AGG- -5'
9256 5' -46.5 NC_002512.2 + 128120 0.66 0.999999
Target:  5'- cGGCGcCGUCUCGCCGaaggucaggcggcggCUGGUcUUCg -3'
miRNA:   3'- -CUGU-GCAGAGCGGCaa-------------GAUUAuAAGg -5'
9256 5' -46.5 NC_002512.2 + 83288 0.66 0.999999
Target:  5'- aGAgGCGUCUggggcCGCCGUUCgucucgguUGAUAUacuUCUg -3'
miRNA:   3'- -CUgUGCAGA-----GCGGCAAG--------AUUAUA---AGG- -5'
9256 5' -46.5 NC_002512.2 + 221187 0.66 0.999999
Target:  5'- aGAgGCGUC-CGCUGUUUU-GUGcUCCc -3'
miRNA:   3'- -CUgUGCAGaGCGGCAAGAuUAUaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.