miRNA display CGI


Results 21 - 31 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9256 5' -46.5 NC_002512.2 + 139166 0.68 0.999939
Target:  5'- aGGC-CGUCUUGCCGcacUCUAGgg--CCa -3'
miRNA:   3'- -CUGuGCAGAGCGGCa--AGAUUauaaGG- -5'
9256 5' -46.5 NC_002512.2 + 210194 0.68 0.999939
Target:  5'- --uGCGUCcCGaCCG-UCUGAUcgUCCg -3'
miRNA:   3'- cugUGCAGaGC-GGCaAGAUUAuaAGG- -5'
9256 5' -46.5 NC_002512.2 + 73980 0.69 0.999896
Target:  5'- gGACGCGUCggCGCCGgaCUcg---UCCc -3'
miRNA:   3'- -CUGUGCAGa-GCGGCaaGAuuauaAGG- -5'
9256 5' -46.5 NC_002512.2 + 137837 0.7 0.999157
Target:  5'- aGCACGUCUCuCUGUUCUuaaauagGUUCUu -3'
miRNA:   3'- cUGUGCAGAGcGGCAAGAuua----UAAGG- -5'
9256 5' -46.5 NC_002512.2 + 176880 0.7 0.999157
Target:  5'- uGGCugGUgUUGUCGUg--GAUGUUCCc -3'
miRNA:   3'- -CUGugCAgAGCGGCAagaUUAUAAGG- -5'
9256 5' -46.5 NC_002512.2 + 222445 0.71 0.998488
Target:  5'- --aGCGUCgcgugCGCCGUUCUcGUcgUUCg -3'
miRNA:   3'- cugUGCAGa----GCGGCAAGAuUAuaAGG- -5'
9256 5' -46.5 NC_002512.2 + 142433 0.74 0.988565
Target:  5'- aGGCGCGUCUCcgguuuCCGUUCUGugcUGUUCg -3'
miRNA:   3'- -CUGUGCAGAGc-----GGCAAGAUu--AUAAGg -5'
9256 5' -46.5 NC_002512.2 + 156725 0.75 0.981424
Target:  5'- aGCugGUCUCGuCCGUcgUCUGGUAcUUCa -3'
miRNA:   3'- cUGugCAGAGC-GGCA--AGAUUAUaAGG- -5'
9256 5' -46.5 NC_002512.2 + 144055 0.76 0.971371
Target:  5'- cGACcCGUCaUCGCCGUUCcuuucUGUUCCc -3'
miRNA:   3'- -CUGuGCAG-AGCGGCAAGauu--AUAAGG- -5'
9256 5' -46.5 NC_002512.2 + 88946 0.76 0.968026
Target:  5'- cGGCGCGUCUCGuCCGUaucuggcucugcgUCUGGgucUCCg -3'
miRNA:   3'- -CUGUGCAGAGC-GGCA-------------AGAUUauaAGG- -5'
9256 5' -46.5 NC_002512.2 + 58760 1.15 0.01945
Target:  5'- gGACACGUCUCGCCGUUCUAAUAUUCCa -3'
miRNA:   3'- -CUGUGCAGAGCGGCAAGAUUAUAAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.