miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9258 3' -54.7 NC_002512.2 + 60032 1.12 0.004499
Target:  5'- gGCAGUCGGAGAUCGAGCCGUGCUACGg -3'
miRNA:   3'- -CGUCAGCCUCUAGCUCGGCACGAUGC- -5'
9258 3' -54.7 NC_002512.2 + 183454 0.76 0.607132
Target:  5'- gGCGGUC-GAGAacgUCGgcgccgccaccaaGGCCGUGCUGCGg -3'
miRNA:   3'- -CGUCAGcCUCU---AGC-------------UCGGCACGAUGC- -5'
9258 3' -54.7 NC_002512.2 + 130480 0.75 0.638006
Target:  5'- uCGGUCGGGGcccgauccGUCGcAGCCGgGCUGCGa -3'
miRNA:   3'- cGUCAGCCUC--------UAGC-UCGGCaCGAUGC- -5'
9258 3' -54.7 NC_002512.2 + 93366 0.73 0.726558
Target:  5'- uGCAGUCccgggaGGGGAUCGGGCCGcaggGC-GCGc -3'
miRNA:   3'- -CGUCAG------CCUCUAGCUCGGCa---CGaUGC- -5'
9258 3' -54.7 NC_002512.2 + 184530 0.72 0.773439
Target:  5'- aGCAGUCGcGGGGUC-AGCCG-GCggcGCGg -3'
miRNA:   3'- -CGUCAGC-CUCUAGcUCGGCaCGa--UGC- -5'
9258 3' -54.7 NC_002512.2 + 178430 0.72 0.773439
Target:  5'- uGCAGUUGGcGGAUCGGGUCG-GC-GCGu -3'
miRNA:   3'- -CGUCAGCC-UCUAGCUCGGCaCGaUGC- -5'
9258 3' -54.7 NC_002512.2 + 129515 0.72 0.791413
Target:  5'- -aAGUCGGgagccgcguacaGGA-CGAcGCCGUGCUGCGu -3'
miRNA:   3'- cgUCAGCC------------UCUaGCU-CGGCACGAUGC- -5'
9258 3' -54.7 NC_002512.2 + 137777 0.72 0.791413
Target:  5'- cGCGGUCuGGAGGUCGgcgcucggcgGGCCGcGCguccgGCGg -3'
miRNA:   3'- -CGUCAG-CCUCUAGC----------UCGGCaCGa----UGC- -5'
9258 3' -54.7 NC_002512.2 + 223916 0.71 0.833829
Target:  5'- cGCGGgCGaGAGGUCGAGCCGg---ACGg -3'
miRNA:   3'- -CGUCaGC-CUCUAGCUCGGCacgaUGC- -5'
9258 3' -54.7 NC_002512.2 + 73907 0.71 0.84963
Target:  5'- uCAGcgCGGGGA-CGuacaGGCCGUGCUGCu -3'
miRNA:   3'- cGUCa-GCCUCUaGC----UCGGCACGAUGc -5'
9258 3' -54.7 NC_002512.2 + 71409 0.7 0.864683
Target:  5'- cGCccccgCGGAGAUCGuGCUGagGCUGCGc -3'
miRNA:   3'- -CGuca--GCCUCUAGCuCGGCa-CGAUGC- -5'
9258 3' -54.7 NC_002512.2 + 26663 0.7 0.869766
Target:  5'- -aGGUCGGGGGcgggcUCGAagcggcagacguacGCCGUGCUgGCGg -3'
miRNA:   3'- cgUCAGCCUCU-----AGCU--------------CGGCACGA-UGC- -5'
9258 3' -54.7 NC_002512.2 + 168715 0.7 0.8712
Target:  5'- cGCcGUCGGGGAgcUCGugcccuccuugcaGGCCGUGCagGCGc -3'
miRNA:   3'- -CGuCAGCCUCU--AGC-------------UCGGCACGa-UGC- -5'
9258 3' -54.7 NC_002512.2 + 87825 0.7 0.892368
Target:  5'- gGCGGUCGGAGGggcCGAGgCGaaaUGCgccgagGCGa -3'
miRNA:   3'- -CGUCAGCCUCUa--GCUCgGC---ACGa-----UGC- -5'
9258 3' -54.7 NC_002512.2 + 27522 0.7 0.898129
Target:  5'- aGC-GUCGGAGGcggcucagaccaaUCGAGCCGggcGCUAa- -3'
miRNA:   3'- -CGuCAGCCUCU-------------AGCUCGGCa--CGAUgc -5'
9258 3' -54.7 NC_002512.2 + 41226 0.7 0.898758
Target:  5'- cGCGGUCGGAcGA-CGGGCCGccGCcGCc -3'
miRNA:   3'- -CGUCAGCCU-CUaGCUCGGCa-CGaUGc -5'
9258 3' -54.7 NC_002512.2 + 227610 0.69 0.910877
Target:  5'- aGCGGcCGGAGggCGGGCgGcgGCgGCGa -3'
miRNA:   3'- -CGUCaGCCUCuaGCUCGgCa-CGaUGC- -5'
9258 3' -54.7 NC_002512.2 + 128652 0.68 0.937239
Target:  5'- -gGGcCgGGGGAUCGAGCUccuccUGCUGCGg -3'
miRNA:   3'- cgUCaG-CCUCUAGCUCGGc----ACGAUGC- -5'
9258 3' -54.7 NC_002512.2 + 208589 0.68 0.937239
Target:  5'- cGCAG-CGGguccgggacgAGGUCGAGguuCCGUGCUGuCGu -3'
miRNA:   3'- -CGUCaGCC----------UCUAGCUC---GGCACGAU-GC- -5'
9258 3' -54.7 NC_002512.2 + 93603 0.68 0.937709
Target:  5'- cGUGGUCGGGGAagaacggccguuggaCGGGCgCGUGCU-CGg -3'
miRNA:   3'- -CGUCAGCCUCUa--------------GCUCG-GCACGAuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.