Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9258 | 3' | -54.7 | NC_002512.2 | + | 3802 | 0.68 | 0.946203 |
Target: 5'- aGCAGUCccGAGAgCGAGCCGUcg-ACGg -3' miRNA: 3'- -CGUCAGc-CUCUaGCUCGGCAcgaUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 18676 | 0.66 | 0.980494 |
Target: 5'- --cGUCGGAGAggaaGAGCuCGUGg-GCGg -3' miRNA: 3'- cguCAGCCUCUag--CUCG-GCACgaUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 23472 | 0.68 | 0.946203 |
Target: 5'- cGCA--CGGAGAUgaugcCGAGCaugcugGUGCUGCGg -3' miRNA: 3'- -CGUcaGCCUCUA-----GCUCGg-----CACGAUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 26663 | 0.7 | 0.869766 |
Target: 5'- -aGGUCGGGGGcgggcUCGAagcggcagacguacGCCGUGCUgGCGg -3' miRNA: 3'- cgUCAGCCUCU-----AGCU--------------CGGCACGA-UGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 27522 | 0.7 | 0.898129 |
Target: 5'- aGC-GUCGGAGGcggcucagaccaaUCGAGCCGggcGCUAa- -3' miRNA: 3'- -CGuCAGCCUCU-------------AGCUCGGCa--CGAUgc -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 28576 | 0.67 | 0.961496 |
Target: 5'- gGCAGaCGGAgcuGAUcCGAGCgGUGC-GCGu -3' miRNA: 3'- -CGUCaGCCU---CUA-GCUCGgCACGaUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 32544 | 0.66 | 0.975993 |
Target: 5'- gGCAGUgGGGGAUCuucuccAGCCGccggGCgccGCGg -3' miRNA: 3'- -CGUCAgCCUCUAGc-----UCGGCa---CGa--UGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 36582 | 0.68 | 0.946203 |
Target: 5'- gGCGGU-GGAGAccuccaggaGAGCC-UGCUGCGa -3' miRNA: 3'- -CGUCAgCCUCUag-------CUCGGcACGAUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 41226 | 0.7 | 0.898758 |
Target: 5'- cGCGGUCGGAcGA-CGGGCCGccGCcGCc -3' miRNA: 3'- -CGUCAGCCU-CUaGCUCGGCa-CGaUGc -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 60032 | 1.12 | 0.004499 |
Target: 5'- gGCAGUCGGAGAUCGAGCCGUGCUACGg -3' miRNA: 3'- -CGUCAGCCUCUAGCUCGGCACGAUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 71409 | 0.7 | 0.864683 |
Target: 5'- cGCccccgCGGAGAUCGuGCUGagGCUGCGc -3' miRNA: 3'- -CGuca--GCCUCUAGCuCGGCa-CGAUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 71977 | 0.66 | 0.973477 |
Target: 5'- cGCAGUUGGGGAacaugCG-GUCGUGgCaGCGg -3' miRNA: 3'- -CGUCAGCCUCUa----GCuCGGCAC-GaUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 73907 | 0.71 | 0.84963 |
Target: 5'- uCAGcgCGGGGA-CGuacaGGCCGUGCUGCu -3' miRNA: 3'- cGUCa-GCCUCUaGC----UCGGCACGAUGc -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 80012 | 0.67 | 0.957995 |
Target: 5'- gGCAGcCGGAGccggaCGAGgCGUcGCUGCu -3' miRNA: 3'- -CGUCaGCCUCua---GCUCgGCA-CGAUGc -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 82031 | 0.68 | 0.946203 |
Target: 5'- -gGGUCGG-GGUCGcGCCG-GCgGCGg -3' miRNA: 3'- cgUCAGCCuCUAGCuCGGCaCGaUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 87825 | 0.7 | 0.892368 |
Target: 5'- gGCGGUCGGAGGggcCGAGgCGaaaUGCgccgagGCGa -3' miRNA: 3'- -CGUCAGCCUCUa--GCUCgGC---ACGa-----UGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 89425 | 0.66 | 0.980494 |
Target: 5'- gGCGGcgugaCGGAGAgguggcgCGAGCUGUGUcggaagGCGa -3' miRNA: 3'- -CGUCa----GCCUCUa------GCUCGGCACGa-----UGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 93366 | 0.73 | 0.726558 |
Target: 5'- uGCAGUCccgggaGGGGAUCGGGCCGcaggGC-GCGc -3' miRNA: 3'- -CGUCAG------CCUCUAGCUCGGCa---CGaUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 93603 | 0.68 | 0.937709 |
Target: 5'- cGUGGUCGGGGAagaacggccguuggaCGGGCgCGUGCU-CGg -3' miRNA: 3'- -CGUCAGCCUCUa--------------GCUCG-GCACGAuGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 96280 | 0.67 | 0.964791 |
Target: 5'- gGCAGgCGGGGGggcugccgCGGGCCGccGCcGCGg -3' miRNA: 3'- -CGUCaGCCUCUa-------GCUCGGCa-CGaUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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