miRNA display CGI


Results 21 - 40 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9265 5' -63.6 NC_002512.2 + 27980 0.72 0.387239
Target:  5'- cGGCCgggcgagauuccggCGCGGGGagacggagaagccgcCGCCGuCCUCGGa -3'
miRNA:   3'- -CCGGa-------------GCGCCCCgu-------------GCGGCuGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 1969 0.72 0.378942
Target:  5'- cGGCgUCGgaGGcGGCGCGuCCGucuccGCCUCGGa -3'
miRNA:   3'- -CCGgAGCg-CC-CCGUGC-GGC-----UGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 89612 0.75 0.266382
Target:  5'- cGUC-CGCGGGGCgcucggGCGCCGAagaCUCGGc -3'
miRNA:   3'- cCGGaGCGCCCCG------UGCGGCUg--GAGCC- -5'
9265 5' -63.6 NC_002512.2 + 67727 0.78 0.16644
Target:  5'- cGGCCgcuuUCGCGGucGGCGUGCCGGCCUCGc -3'
miRNA:   3'- -CCGG----AGCGCC--CCGUGCGGCUGGAGCc -5'
9265 5' -63.6 NC_002512.2 + 86327 0.71 0.450196
Target:  5'- cGGCCcgccCGCGGGGagACGCgCGGCCgccgaCGGc -3'
miRNA:   3'- -CCGGa---GCGCCCCg-UGCG-GCUGGa----GCC- -5'
9265 5' -63.6 NC_002512.2 + 75564 0.71 0.425613
Target:  5'- cGCCgggGCGGGGC-CGCCG-CCgucgCGGu -3'
miRNA:   3'- cCGGag-CGCCCCGuGCGGCuGGa---GCC- -5'
9265 5' -63.6 NC_002512.2 + 79937 0.72 0.371504
Target:  5'- aGGCCgaggcggCGCGGGGguCcGCCuGCCgUCGGa -3'
miRNA:   3'- -CCGGa------GCGCCCCguG-CGGcUGG-AGCC- -5'
9265 5' -63.6 NC_002512.2 + 4854 0.79 0.1517
Target:  5'- cGGCCaUCGCGGGGUucgccgcgugcgGCGCCGGCUggaGGa -3'
miRNA:   3'- -CCGG-AGCGCCCCG------------UGCGGCUGGag-CC- -5'
9265 5' -63.6 NC_002512.2 + 7431 0.71 0.417598
Target:  5'- gGGCCggCGCGaGGUugGCCGcgGCC-CGGg -3'
miRNA:   3'- -CCGGa-GCGCcCCGugCGGC--UGGaGCC- -5'
9265 5' -63.6 NC_002512.2 + 3435 0.8 0.134946
Target:  5'- cGCCUCGCGGGGCugGUCGGUgaCGGc -3'
miRNA:   3'- cCGGAGCGCCCCGugCGGCUGgaGCC- -5'
9265 5' -63.6 NC_002512.2 + 104934 0.72 0.371504
Target:  5'- cGGCCUCcucguccgGCGucGGCgcgGCGCCGGCCUCGu -3'
miRNA:   3'- -CCGGAG--------CGCc-CCG---UGCGGCUGGAGCc -5'
9265 5' -63.6 NC_002512.2 + 45208 0.72 0.409676
Target:  5'- cGGCggCGCGGacGGC-CGCCGACCggauuUCGGc -3'
miRNA:   3'- -CCGgaGCGCC--CCGuGCGGCUGG-----AGCC- -5'
9265 5' -63.6 NC_002512.2 + 111289 0.73 0.356929
Target:  5'- cGGCCgcCGCGGGGagagggcCGCCGAUCgCGGc -3'
miRNA:   3'- -CCGGa-GCGCCCCgu-----GCGGCUGGaGCC- -5'
9265 5' -63.6 NC_002512.2 + 80640 0.74 0.29641
Target:  5'- cGGCCgucCGCGGcGGCgGCGCCGGguCCgUCGGu -3'
miRNA:   3'- -CCGGa--GCGCC-CCG-UGCGGCU--GG-AGCC- -5'
9265 5' -63.6 NC_002512.2 + 68896 0.75 0.242568
Target:  5'- -cCCUCGcCGGGGCGgucgugcugcuggcCGCCGcgGCCUCGGg -3'
miRNA:   3'- ccGGAGC-GCCCCGU--------------GCGGC--UGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 15574 0.78 0.175891
Target:  5'- cGGCCugcUCGUGcGGCACGCCGAagacgaaggugaagcCCUCGGg -3'
miRNA:   3'- -CCGG---AGCGCcCCGUGCGGCU---------------GGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 81158 0.7 0.478973
Target:  5'- cGG-CUCGUGGGGCgcuuuccucuugaugGCGCCGACgaucCGGg -3'
miRNA:   3'- -CCgGAGCGCCCCG---------------UGCGGCUGga--GCC- -5'
9265 5' -63.6 NC_002512.2 + 45394 0.71 0.458563
Target:  5'- gGGCCgggacugucgcUCGUGcGGGCgcucgacggcgGCGCCGGCCgCGGc -3'
miRNA:   3'- -CCGG-----------AGCGC-CCCG-----------UGCGGCUGGaGCC- -5'
9265 5' -63.6 NC_002512.2 + 108728 0.71 0.441914
Target:  5'- cGCCUCGCccuGGGcCGCgGCCGGCguCUCGGc -3'
miRNA:   3'- cCGGAGCGc--CCC-GUG-CGGCUG--GAGCC- -5'
9265 5' -63.6 NC_002512.2 + 4092 0.71 0.433719
Target:  5'- cGGCCgccCGCGGcccGGCcgGCGCa-GCCUCGGg -3'
miRNA:   3'- -CCGGa--GCGCC---CCG--UGCGgcUGGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.