miRNA display CGI


Results 1 - 20 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9265 5' -63.6 NC_002512.2 + 62737 1.12 0.000829
Target:  5'- cGGCCUCGCGGGGCACGCCGACCUCGGa -3'
miRNA:   3'- -CCGGAGCGCCCCGUGCGGCUGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 79937 0.72 0.371504
Target:  5'- aGGCCgaggcggCGCGGGGguCcGCCuGCCgUCGGa -3'
miRNA:   3'- -CCGGa------GCGCCCCguG-CGGcUGG-AGCC- -5'
9265 5' -63.6 NC_002512.2 + 1969 0.72 0.378942
Target:  5'- cGGCgUCGgaGGcGGCGCGuCCGucuccGCCUCGGa -3'
miRNA:   3'- -CCGgAGCg-CC-CCGUGC-GGC-----UGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 79598 0.66 0.748196
Target:  5'- cGCCucuUCGCGGgcGGCAgCGCCGGgucgcgguaCUCGGc -3'
miRNA:   3'- cCGG---AGCGCC--CCGU-GCGGCUg--------GAGCC- -5'
9265 5' -63.6 NC_002512.2 + 15574 0.78 0.175891
Target:  5'- cGGCCugcUCGUGcGGCACGCCGAagacgaaggugaagcCCUCGGg -3'
miRNA:   3'- -CCGG---AGCGCcCCGUGCGGCU---------------GGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 134137 0.76 0.22854
Target:  5'- cGGCCgUCGCGGcGCGCGucCCGGCCggCGGg -3'
miRNA:   3'- -CCGG-AGCGCCcCGUGC--GGCUGGa-GCC- -5'
9265 5' -63.6 NC_002512.2 + 68896 0.75 0.242568
Target:  5'- -cCCUCGcCGGGGCGgucgugcugcuggcCGCCGcgGCCUCGGg -3'
miRNA:   3'- ccGGAGC-GCCCCGU--------------GCGGC--UGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 31746 0.75 0.255078
Target:  5'- cGGCCcgCGCGGGGCucgcgcuuCGCCaACCUCa- -3'
miRNA:   3'- -CCGGa-GCGCCCCGu-------GCGGcUGGAGcc -5'
9265 5' -63.6 NC_002512.2 + 80640 0.74 0.29641
Target:  5'- cGGCCgucCGCGGcGGCgGCGCCGGguCCgUCGGu -3'
miRNA:   3'- -CCGGa--GCGCC-CCG-UGCGGCU--GG-AGCC- -5'
9265 5' -63.6 NC_002512.2 + 80701 0.72 0.364166
Target:  5'- cGGCgUCcgggggGCGaGGGCGCGCgGGCCcgCGGg -3'
miRNA:   3'- -CCGgAG------CGC-CCCGUGCGgCUGGa-GCC- -5'
9265 5' -63.6 NC_002512.2 + 20229 0.73 0.349794
Target:  5'- cGGCaucaUCGacaGGGGCACGCCGcaGCCgUCGu -3'
miRNA:   3'- -CCGg---AGCg--CCCCGUGCGGC--UGG-AGCc -5'
9265 5' -63.6 NC_002512.2 + 89612 0.75 0.266382
Target:  5'- cGUC-CGCGGGGCgcucggGCGCCGAagaCUCGGc -3'
miRNA:   3'- cCGGaGCGCCCCG------UGCGGCUg--GAGCC- -5'
9265 5' -63.6 NC_002512.2 + 3435 0.8 0.134946
Target:  5'- cGCCUCGCGGGGCugGUCGGUgaCGGc -3'
miRNA:   3'- cCGGAGCGCCCCGugCGGCUGgaGCC- -5'
9265 5' -63.6 NC_002512.2 + 111289 0.73 0.356929
Target:  5'- cGGCCgcCGCGGGGagagggcCGCCGAUCgCGGc -3'
miRNA:   3'- -CCGGa-GCGCCCCgu-----GCGGCUGGaGCC- -5'
9265 5' -63.6 NC_002512.2 + 4854 0.79 0.1517
Target:  5'- cGGCCaUCGCGGGGUucgccgcgugcgGCGCCGGCUggaGGa -3'
miRNA:   3'- -CCGG-AGCGCCCCG------------UGCGGCUGGag-CC- -5'
9265 5' -63.6 NC_002512.2 + 43064 0.75 0.257307
Target:  5'- gGGCCUCGCcgaggcaccggucccGGGGCGCGgCGAgCagCGGg -3'
miRNA:   3'- -CCGGAGCG---------------CCCCGUGCgGCUgGa-GCC- -5'
9265 5' -63.6 NC_002512.2 + 62404 0.72 0.364166
Target:  5'- cGGCCUCGuCGuGGaagauCACGUcgaCGACCUCGGa -3'
miRNA:   3'- -CCGGAGC-GC-CCc----GUGCG---GCUGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 104934 0.72 0.371504
Target:  5'- cGGCCUCcucguccgGCGucGGCgcgGCGCCGGCCUCGu -3'
miRNA:   3'- -CCGGAG--------CGCc-CCG---UGCGGCUGGAGCc -5'
9265 5' -63.6 NC_002512.2 + 67727 0.78 0.16644
Target:  5'- cGGCCgcuuUCGCGGucGGCGUGCCGGCCUCGc -3'
miRNA:   3'- -CCGG----AGCGCC--CCGUGCGGCUGGAGCc -5'
9265 5' -63.6 NC_002512.2 + 51178 0.76 0.238864
Target:  5'- gGGCCUggccagcaaCGCGGcGGcCGCGCUgcgGGCCUCGGa -3'
miRNA:   3'- -CCGGA---------GCGCC-CC-GUGCGG---CUGGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.