miRNA display CGI


Results 1 - 20 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9265 5' -63.6 NC_002512.2 + 62737 1.12 0.000829
Target:  5'- cGGCCUCGCGGGGCACGCCGACCUCGGa -3'
miRNA:   3'- -CCGGAGCGCCCCGUGCGGCUGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 121005 0.81 0.103927
Target:  5'- cGGCagagcgaaGCGGGGCGUGCUGACCUCGGg -3'
miRNA:   3'- -CCGgag-----CGCCCCGUGCGGCUGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 205639 0.81 0.113529
Target:  5'- uGCC-CGCGGGGgACGCCGucggcgggcccgacGCCUCGGa -3'
miRNA:   3'- cCGGaGCGCCCCgUGCGGC--------------UGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 214952 0.8 0.127825
Target:  5'- uGGCCgcggaCGCacGGGGUccggauccagaccgACGCCGACCUCGGg -3'
miRNA:   3'- -CCGGa----GCG--CCCCG--------------UGCGGCUGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 3435 0.8 0.134946
Target:  5'- cGCCUCGCGGGGCugGUCGGUgaCGGc -3'
miRNA:   3'- cCGGAGCGCCCCGugCGGCUGgaGCC- -5'
9265 5' -63.6 NC_002512.2 + 87847 0.79 0.144783
Target:  5'- gGGcCCUCGCGGcGGguCGCCGGCCccCGGc -3'
miRNA:   3'- -CC-GGAGCGCC-CCguGCGGCUGGa-GCC- -5'
9265 5' -63.6 NC_002512.2 + 4854 0.79 0.1517
Target:  5'- cGGCCaUCGCGGGGUucgccgcgugcgGCGCCGGCUggaGGa -3'
miRNA:   3'- -CCGG-AGCGCCCCG------------UGCGGCUGGag-CC- -5'
9265 5' -63.6 NC_002512.2 + 184799 0.78 0.162639
Target:  5'- gGGCCUcCGCGGGGagacccuucCGCGCCGGCCgCGa -3'
miRNA:   3'- -CCGGA-GCGCCCC---------GUGCGGCUGGaGCc -5'
9265 5' -63.6 NC_002512.2 + 67727 0.78 0.16644
Target:  5'- cGGCCgcuuUCGCGGucGGCGUGCCGGCCUCGc -3'
miRNA:   3'- -CCGG----AGCGCC--CCGUGCGGCUGGAGCc -5'
9265 5' -63.6 NC_002512.2 + 205097 0.78 0.174283
Target:  5'- cGuCCUCGgGGGGCGCGCCcgGACCcgagCGGg -3'
miRNA:   3'- cC-GGAGCgCCCCGUGCGG--CUGGa---GCC- -5'
9265 5' -63.6 NC_002512.2 + 15574 0.78 0.175891
Target:  5'- cGGCCugcUCGUGcGGCACGCCGAagacgaaggugaagcCCUCGGg -3'
miRNA:   3'- -CCGG---AGCGCcCCGUGCGGCU---------------GGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 219050 0.78 0.178327
Target:  5'- cGGCCgcggCGCGGGGCucccCGCgGGCUUCGa -3'
miRNA:   3'- -CCGGa---GCGCCCCGu---GCGgCUGGAGCc -5'
9265 5' -63.6 NC_002512.2 + 92672 0.77 0.209023
Target:  5'- cGGCCgcccgCGCcGGGCGCGCCGcccACCgggCGGa -3'
miRNA:   3'- -CCGGa----GCGcCCCGUGCGGC---UGGa--GCC- -5'
9265 5' -63.6 NC_002512.2 + 158927 0.76 0.213763
Target:  5'- cGGCUUCgGCGGGG-GCGCCGGCggccuCUCGGu -3'
miRNA:   3'- -CCGGAG-CGCCCCgUGCGGCUG-----GAGCC- -5'
9265 5' -63.6 NC_002512.2 + 134137 0.76 0.22854
Target:  5'- cGGCCgUCGCGGcGCGCGucCCGGCCggCGGg -3'
miRNA:   3'- -CCGG-AGCGCCcCGUGC--GGCUGGa-GCC- -5'
9265 5' -63.6 NC_002512.2 + 51178 0.76 0.238864
Target:  5'- gGGCCUggccagcaaCGCGGcGGcCGCGCUgcgGGCCUCGGa -3'
miRNA:   3'- -CCGGA---------GCGCC-CC-GUGCGG---CUGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 68896 0.75 0.242568
Target:  5'- -cCCUCGcCGGGGCGgucgugcugcuggcCGCCGcgGCCUCGGg -3'
miRNA:   3'- ccGGAGC-GCCCCGU--------------GCGGC--UGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 198149 0.75 0.254523
Target:  5'- aGCCcCGCGcGGGCcgggucgGCGCCGGCCggCGGa -3'
miRNA:   3'- cCGGaGCGC-CCCG-------UGCGGCUGGa-GCC- -5'
9265 5' -63.6 NC_002512.2 + 227367 0.75 0.255078
Target:  5'- aGGCC---CGGGGC-CGCCGGCgUCGGg -3'
miRNA:   3'- -CCGGagcGCCCCGuGCGGCUGgAGCC- -5'
9265 5' -63.6 NC_002512.2 + 205023 0.75 0.255078
Target:  5'- cGCCUCGguCGGGGCcgcguccgcCGCCGACCggccgCGGg -3'
miRNA:   3'- cCGGAGC--GCCCCGu--------GCGGCUGGa----GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.