miRNA display CGI


Results 1 - 20 of 328 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9265 5' -63.6 NC_002512.2 + 1969 0.72 0.378942
Target:  5'- cGGCgUCGgaGGcGGCGCGuCCGucuccGCCUCGGa -3'
miRNA:   3'- -CCGgAGCg-CC-CCGUGC-GGC-----UGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 2292 0.73 0.329002
Target:  5'- cGGCCgcugcgggUgGCGGGGCucugcuGCGCCGgcgguccggagGCCUCGGu -3'
miRNA:   3'- -CCGG--------AgCGCCCCG------UGCGGC-----------UGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 2413 0.66 0.712437
Target:  5'- -uCCUCGCGGccGGC-CGCCcccGGCCUCu- -3'
miRNA:   3'- ccGGAGCGCC--CCGuGCGG---CUGGAGcc -5'
9265 5' -63.6 NC_002512.2 + 2465 0.67 0.679466
Target:  5'- cGGCC-CGCGcccGCGCGCgagaguagguccgggCGGCCUUGGg -3'
miRNA:   3'- -CCGGaGCGCcc-CGUGCG---------------GCUGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 2808 0.66 0.737589
Target:  5'- cGGCCggcgggacccggCGCGGGcGCGgGCCcgGACgaCGGc -3'
miRNA:   3'- -CCGGa-----------GCGCCC-CGUgCGG--CUGgaGCC- -5'
9265 5' -63.6 NC_002512.2 + 3435 0.8 0.134946
Target:  5'- cGCCUCGCGGGGCugGUCGGUgaCGGc -3'
miRNA:   3'- cCGGAGCGCCCCGugCGGCUGgaGCC- -5'
9265 5' -63.6 NC_002512.2 + 3506 0.66 0.730457
Target:  5'- uGCgUCGCaGGcccaCGCGCCGACCUuCGa -3'
miRNA:   3'- cCGgAGCGcCCc---GUGCGGCUGGA-GCc -5'
9265 5' -63.6 NC_002512.2 + 3529 0.66 0.748196
Target:  5'- aGCC-CGCGGGGCcCGaaG-CC-CGGg -3'
miRNA:   3'- cCGGaGCGCCCCGuGCggCuGGaGCC- -5'
9265 5' -63.6 NC_002512.2 + 4092 0.71 0.433719
Target:  5'- cGGCCgccCGCGGcccGGCcgGCGCa-GCCUCGGg -3'
miRNA:   3'- -CCGGa--GCGCC---CCG--UGCGgcUGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 4449 0.66 0.721478
Target:  5'- uGCCgggCGCGGGGgucgGCGUCGGCCcCa- -3'
miRNA:   3'- cCGGa--GCGCCCCg---UGCGGCUGGaGcc -5'
9265 5' -63.6 NC_002512.2 + 4854 0.79 0.1517
Target:  5'- cGGCCaUCGCGGGGUucgccgcgugcgGCGCCGGCUggaGGa -3'
miRNA:   3'- -CCGG-AGCGCCCCG------------UGCGGCUGGag-CC- -5'
9265 5' -63.6 NC_002512.2 + 5072 0.66 0.721478
Target:  5'- cGCC-CGCGGcguuGGUcgucguCGCCGGCgUCGGc -3'
miRNA:   3'- cCGGaGCGCC----CCGu-----GCGGCUGgAGCC- -5'
9265 5' -63.6 NC_002512.2 + 5187 0.66 0.69419
Target:  5'- cGGCCccaGCaGGGCGgGCagGACCgCGGg -3'
miRNA:   3'- -CCGGag-CGcCCCGUgCGg-CUGGaGCC- -5'
9265 5' -63.6 NC_002512.2 + 5485 0.66 0.703338
Target:  5'- gGGaCCUCGUGGcGCGCGuCCGcGCCggGGu -3'
miRNA:   3'- -CC-GGAGCGCCcCGUGC-GGC-UGGagCC- -5'
9265 5' -63.6 NC_002512.2 + 5627 0.7 0.501575
Target:  5'- -cUCUCGCGGGcGUcggGCGCCGACC-CGc -3'
miRNA:   3'- ccGGAGCGCCC-CG---UGCGGCUGGaGCc -5'
9265 5' -63.6 NC_002512.2 + 6339 0.7 0.501575
Target:  5'- gGGaCCgggCGCGGGGC-CgGCgGGCCgCGGg -3'
miRNA:   3'- -CC-GGa--GCGCCCCGuG-CGgCUGGaGCC- -5'
9265 5' -63.6 NC_002512.2 + 6674 0.66 0.748196
Target:  5'- cGGCCgggaCGCGcuccGGgACGCCGuCCccgUCGGg -3'
miRNA:   3'- -CCGGa---GCGCc---CCgUGCGGCuGG---AGCC- -5'
9265 5' -63.6 NC_002512.2 + 7024 0.68 0.62932
Target:  5'- gGGCCUUGCcGGGCuCGUCG--UUCGGg -3'
miRNA:   3'- -CCGGAGCGcCCCGuGCGGCugGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 7246 0.69 0.519274
Target:  5'- cGGCCgUCGCGGcGGaGCGgCGuCCgUCGGg -3'
miRNA:   3'- -CCGG-AGCGCC-CCgUGCgGCuGG-AGCC- -5'
9265 5' -63.6 NC_002512.2 + 7431 0.71 0.417598
Target:  5'- gGGCCggCGCGaGGUugGCCGcgGCC-CGGg -3'
miRNA:   3'- -CCGGa-GCGCcCCGugCGGC--UGGaGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.