miRNA display CGI


Results 1 - 20 of 328 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9265 5' -63.6 NC_002512.2 + 79598 0.66 0.748196
Target:  5'- cGCCucuUCGCGGgcGGCAgCGCCGGgucgcgguaCUCGGc -3'
miRNA:   3'- cCGG---AGCGCC--CCGU-GCGGCUg--------GAGCC- -5'
9265 5' -63.6 NC_002512.2 + 194623 0.66 0.739365
Target:  5'- cGGCCgucgcCGCGGGGgACcugcCCGuCCUCu- -3'
miRNA:   3'- -CCGGa----GCGCCCCgUGc---GGCuGGAGcc -5'
9265 5' -63.6 NC_002512.2 + 209024 0.66 0.730457
Target:  5'- cGCCaugaGCGGGGCG-GCCGcguCC-CGGa -3'
miRNA:   3'- cCGGag--CGCCCCGUgCGGCu--GGaGCC- -5'
9265 5' -63.6 NC_002512.2 + 186403 0.66 0.730457
Target:  5'- aGCUcCGCGuccucGGCuuccACGCCGugCUCGGc -3'
miRNA:   3'- cCGGaGCGCc----CCG----UGCGGCugGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 146103 0.66 0.730457
Target:  5'- cGGuCCUCgGCGGcGGCggcgGCGCCGuCUUCu- -3'
miRNA:   3'- -CC-GGAG-CGCC-CCG----UGCGGCuGGAGcc -5'
9265 5' -63.6 NC_002512.2 + 3506 0.66 0.730457
Target:  5'- uGCgUCGCaGGcccaCGCGCCGACCUuCGa -3'
miRNA:   3'- cCGgAGCGcCCc---GUGCGGCUGGA-GCc -5'
9265 5' -63.6 NC_002512.2 + 204724 0.66 0.730457
Target:  5'- gGGCCcgggGCGGGGgGC-CgGACC-CGGg -3'
miRNA:   3'- -CCGGag--CGCCCCgUGcGgCUGGaGCC- -5'
9265 5' -63.6 NC_002512.2 + 225292 0.66 0.721478
Target:  5'- cGUCUCGCGGcccGCgGCGCCG-CCUCc- -3'
miRNA:   3'- cCGGAGCGCCc--CG-UGCGGCuGGAGcc -5'
9265 5' -63.6 NC_002512.2 + 111788 0.66 0.721478
Target:  5'- cGGCCgguccgCGCGGucGC-CGCCGGCgC-CGGa -3'
miRNA:   3'- -CCGGa-----GCGCCc-CGuGCGGCUG-GaGCC- -5'
9265 5' -63.6 NC_002512.2 + 112742 0.66 0.739365
Target:  5'- cGGCa-CGCGGaaGGCGgagaGCCGGCCguccCGGa -3'
miRNA:   3'- -CCGgaGCGCC--CCGUg---CGGCUGGa---GCC- -5'
9265 5' -63.6 NC_002512.2 + 186735 0.66 0.739365
Target:  5'- cGGCCaacgUCGCGGGcacCACGCCcGGCauguucccgCGGg -3'
miRNA:   3'- -CCGG----AGCGCCCc--GUGCGG-CUGga-------GCC- -5'
9265 5' -63.6 NC_002512.2 + 212478 0.66 0.739365
Target:  5'- cGCCUCGaGGacUACGacgacuCCGACCUCGGg -3'
miRNA:   3'- cCGGAGCgCCccGUGC------GGCUGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 179103 0.66 0.748196
Target:  5'- cGCCUCGUGGGuccugauCGCGUCGAUCgCGu -3'
miRNA:   3'- cCGGAGCGCCCc------GUGCGGCUGGaGCc -5'
9265 5' -63.6 NC_002512.2 + 220409 0.66 0.748196
Target:  5'- cGCCgcUCGC-GGGCcCGCCcGCCUaCGGc -3'
miRNA:   3'- cCGG--AGCGcCCCGuGCGGcUGGA-GCC- -5'
9265 5' -63.6 NC_002512.2 + 185509 0.66 0.748196
Target:  5'- gGGCUgCGCgGGGGCcUGCCGcuCUUCGa -3'
miRNA:   3'- -CCGGaGCG-CCCCGuGCGGCu-GGAGCc -5'
9265 5' -63.6 NC_002512.2 + 170373 0.66 0.748196
Target:  5'- gGGCCgugCGCGGcGcCGCGCUGcACUUCuGGc -3'
miRNA:   3'- -CCGGa--GCGCCcC-GUGCGGC-UGGAG-CC- -5'
9265 5' -63.6 NC_002512.2 + 126334 0.66 0.748196
Target:  5'- aGGCCgcCGCGuccgggacGGGCGCGCaCGACgCguucaCGGu -3'
miRNA:   3'- -CCGGa-GCGC--------CCCGUGCG-GCUG-Ga----GCC- -5'
9265 5' -63.6 NC_002512.2 + 108508 0.66 0.748196
Target:  5'- aGGCCggGCccGGCGC-CCGACCggcCGGg -3'
miRNA:   3'- -CCGGagCGccCCGUGcGGCUGGa--GCC- -5'
9265 5' -63.6 NC_002512.2 + 227472 0.66 0.748196
Target:  5'- aGGCCg---GGGGCG-GCCGGCCgcgaGGa -3'
miRNA:   3'- -CCGGagcgCCCCGUgCGGCUGGag--CC- -5'
9265 5' -63.6 NC_002512.2 + 182426 0.66 0.739365
Target:  5'- cGCCUUGCGGa--AC-UCGGCCUCGGc -3'
miRNA:   3'- cCGGAGCGCCccgUGcGGCUGGAGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.