miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9280 5' -58.7 NC_002512.2 + 92138 0.66 0.863763
Target:  5'- --gCUGCGGGCGCUgcGGCGCGugcaGGAc- -3'
miRNA:   3'- cagGAUGCCCGUGGa-UCGCGC----CCUuu -5'
9280 5' -58.7 NC_002512.2 + 96597 0.7 0.657478
Target:  5'- gGUCCUcUGGGgACCggAGCGCGGaGAc- -3'
miRNA:   3'- -CAGGAuGCCCgUGGa-UCGCGCC-CUuu -5'
9280 5' -58.7 NC_002512.2 + 98088 0.67 0.816458
Target:  5'- uGUCCgagcggaugACGGGgAC--GGCGCGGGAc- -3'
miRNA:   3'- -CAGGa--------UGCCCgUGgaUCGCGCCCUuu -5'
9280 5' -58.7 NC_002512.2 + 98568 0.74 0.395393
Target:  5'- aUCCgGCGGGCGCCUcgGGCGgCGGGu-- -3'
miRNA:   3'- cAGGaUGCCCGUGGA--UCGC-GCCCuuu -5'
9280 5' -58.7 NC_002512.2 + 100043 0.71 0.597966
Target:  5'- cUCCgcCGGGCGCUgAGaCGCGGGGGc -3'
miRNA:   3'- cAGGauGCCCGUGGaUC-GCGCCCUUu -5'
9280 5' -58.7 NC_002512.2 + 101600 0.7 0.667374
Target:  5'- gGUCgUGCGGGCggccgucgGCCcGGCGCcGGGAc- -3'
miRNA:   3'- -CAGgAUGCCCG--------UGGaUCGCG-CCCUuu -5'
9280 5' -58.7 NC_002512.2 + 101884 0.67 0.781681
Target:  5'- -gCC-GCGGGCGaa-AGCGCGGGGAc -3'
miRNA:   3'- caGGaUGCCCGUggaUCGCGCCCUUu -5'
9280 5' -58.7 NC_002512.2 + 102278 0.66 0.870994
Target:  5'- -cCCUACGGGCuCCUGGCcaccacCGuGGAc- -3'
miRNA:   3'- caGGAUGCCCGuGGAUCGc-----GC-CCUuu -5'
9280 5' -58.7 NC_002512.2 + 103027 0.7 0.627709
Target:  5'- aGUCCaccACGGGCucguagaagACCgggggcaggAGCGCGGGGAAc -3'
miRNA:   3'- -CAGGa--UGCCCG---------UGGa--------UCGCGCCCUUU- -5'
9280 5' -58.7 NC_002512.2 + 106760 0.69 0.677242
Target:  5'- cGUCCcccgggACGGcCGCCgacGGCGCGGGAc- -3'
miRNA:   3'- -CAGGa-----UGCCcGUGGa--UCGCGCCCUuu -5'
9280 5' -58.7 NC_002512.2 + 116507 0.66 0.863763
Target:  5'- -cCCUGCuGGC-CCUGGUGCGGu--- -3'
miRNA:   3'- caGGAUGcCCGuGGAUCGCGCCcuuu -5'
9280 5' -58.7 NC_002512.2 + 118591 0.69 0.706605
Target:  5'- gGUCCcagacccCGGGCGUCUGGcCGCGGGAc- -3'
miRNA:   3'- -CAGGau-----GCCCGUGGAUC-GCGCCCUuu -5'
9280 5' -58.7 NC_002512.2 + 120609 0.68 0.772651
Target:  5'- ----aGCGGGCGCCggugAGaGCGGGAGg -3'
miRNA:   3'- caggaUGCCCGUGGa---UCgCGCCCUUu -5'
9280 5' -58.7 NC_002512.2 + 121397 0.68 0.763504
Target:  5'- -gCCggACGGagccGCGCCUGGCGUGGaGGGAg -3'
miRNA:   3'- caGGa-UGCC----CGUGGAUCGCGCC-CUUU- -5'
9280 5' -58.7 NC_002512.2 + 127850 0.66 0.840913
Target:  5'- aGUCCggaGCGGGaucCCgugGGCGCGcGGGAc -3'
miRNA:   3'- -CAGGa--UGCCCgu-GGa--UCGCGC-CCUUu -5'
9280 5' -58.7 NC_002512.2 + 128848 0.68 0.763504
Target:  5'- -aCCgcuCGGGCGCC--GCGCGGGc-- -3'
miRNA:   3'- caGGau-GCCCGUGGauCGCGCCCuuu -5'
9280 5' -58.7 NC_002512.2 + 134704 0.68 0.743946
Target:  5'- cGUCCUcucGCGGGCgcucuccGCCUAGCGa-GGAc- -3'
miRNA:   3'- -CAGGA---UGCCCG-------UGGAUCGCgcCCUuu -5'
9280 5' -58.7 NC_002512.2 + 137200 0.72 0.529676
Target:  5'- gGUCCgcccgguggGCGGcGCGCCcGGCGCGGGc-- -3'
miRNA:   3'- -CAGGa--------UGCC-CGUGGaUCGCGCCCuuu -5'
9280 5' -58.7 NC_002512.2 + 148423 0.67 0.824776
Target:  5'- cUCCUGCGGG-ACCgc-CGgGGGAGGa -3'
miRNA:   3'- cAGGAUGCCCgUGGaucGCgCCCUUU- -5'
9280 5' -58.7 NC_002512.2 + 149427 0.71 0.607866
Target:  5'- -aCCgcgGCGGGgGCg-GGCGCGGGggGa -3'
miRNA:   3'- caGGa--UGCCCgUGgaUCGCGCCCuuU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.