Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9280 | 5' | -58.7 | NC_002512.2 | + | 2568 | 0.66 | 0.863763 |
Target: 5'- uUCCU-CGGGCGCC-GGCGCGu---- -3' miRNA: 3'- cAGGAuGCCCGUGGaUCGCGCccuuu -5' |
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9280 | 5' | -58.7 | NC_002512.2 | + | 2810 | 0.66 | 0.870994 |
Target: 5'- -gCCgGCGGG-ACCcGGCGCGGGc-- -3' miRNA: 3'- caGGaUGCCCgUGGaUCGCGCCCuuu -5' |
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9280 | 5' | -58.7 | NC_002512.2 | + | 4439 | 0.7 | 0.627709 |
Target: 5'- -aCCgGCgGGGUGCCgGGCGCGGGGGu -3' miRNA: 3'- caGGaUG-CCCGUGGaUCGCGCCCUUu -5' |
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9280 | 5' | -58.7 | NC_002512.2 | + | 5209 | 0.68 | 0.772651 |
Target: 5'- -aCC-GCGGGCcaGCCgacGGCgGCGGGAAAg -3' miRNA: 3'- caGGaUGCCCG--UGGa--UCG-CGCCCUUU- -5' |
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9280 | 5' | -58.7 | NC_002512.2 | + | 6330 | 0.66 | 0.863763 |
Target: 5'- -gCCcGCGGGgggACCgGGCGCGGGGc- -3' miRNA: 3'- caGGaUGCCCg--UGGaUCGCGCCCUuu -5' |
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9280 | 5' | -58.7 | NC_002512.2 | + | 21447 | 0.66 | 0.832931 |
Target: 5'- cGUCCgacucgauCGGGgGCC-GGCGCcGGGAGc -3' miRNA: 3'- -CAGGau------GCCCgUGGaUCGCG-CCCUUu -5' |
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9280 | 5' | -58.7 | NC_002512.2 | + | 27463 | 0.66 | 0.870994 |
Target: 5'- cUCC-GCGGGuCAcgccacuguuCCgcGCGCGGGAAAa -3' miRNA: 3'- cAGGaUGCCC-GU----------GGauCGCGCCCUUU- -5' |
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9280 | 5' | -58.7 | NC_002512.2 | + | 27971 | 0.66 | 0.869564 |
Target: 5'- -gCCgAUGGGCgGCCgggcgagauuccGGCGCGGGGAGa -3' miRNA: 3'- caGGaUGCCCG-UGGa-----------UCGCGCCCUUU- -5' |
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9280 | 5' | -58.7 | NC_002512.2 | + | 31724 | 0.66 | 0.856335 |
Target: 5'- gGUCCgccgGCcGGCGCCgacccggcccGCGCGGGGc- -3' miRNA: 3'- -CAGGa---UGcCCGUGGau--------CGCGCCCUuu -5' |
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9280 | 5' | -58.7 | NC_002512.2 | + | 32565 | 0.67 | 0.781681 |
Target: 5'- -gCCgcCGGGCGCCgcgGGUGcCGGGGu- -3' miRNA: 3'- caGGauGCCCGUGGa--UCGC-GCCCUuu -5' |
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9280 | 5' | -58.7 | NC_002512.2 | + | 38651 | 0.69 | 0.706605 |
Target: 5'- uGUCC-GCGGGUACCgaggaGGC-CGGGGAc -3' miRNA: 3'- -CAGGaUGCCCGUGGa----UCGcGCCCUUu -5' |
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9280 | 5' | -58.7 | NC_002512.2 | + | 42571 | 0.66 | 0.848716 |
Target: 5'- -aCggGCGGGCGCCgcgaggcgAGCGgCGGGGc- -3' miRNA: 3'- caGgaUGCCCGUGGa-------UCGC-GCCCUuu -5' |
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9280 | 5' | -58.7 | NC_002512.2 | + | 47713 | 0.66 | 0.832931 |
Target: 5'- aUCCUGCGcGcCGCCU--CGCGGGAGGa -3' miRNA: 3'- cAGGAUGCcC-GUGGAucGCGCCCUUU- -5' |
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9280 | 5' | -58.7 | NC_002512.2 | + | 48094 | 0.66 | 0.870994 |
Target: 5'- gGUCgCUgcugACGGGCaACCgGGCGCuGGAGGa -3' miRNA: 3'- -CAG-GA----UGCCCG-UGGaUCGCGcCCUUU- -5' |
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9280 | 5' | -58.7 | NC_002512.2 | + | 67647 | 0.67 | 0.781681 |
Target: 5'- cGUCC-ACGGGCcCCcGGaCGCGGGc-- -3' miRNA: 3'- -CAGGaUGCCCGuGGaUC-GCGCCCuuu -5' |
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9280 | 5' | -58.7 | NC_002512.2 | + | 75697 | 1.05 | 0.003693 |
Target: 5'- gGUCCUACGGGCACCUAGCGCGGGAAAa -3' miRNA: 3'- -CAGGAUGCCCGUGGAUCGCGCCCUUU- -5' |
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9280 | 5' | -58.7 | NC_002512.2 | + | 82194 | 0.67 | 0.816458 |
Target: 5'- cGUCCgccguCGGGCcggcguCCUcccGGgGCGGGAAGc -3' miRNA: 3'- -CAGGau---GCCCGu-----GGA---UCgCGCCCUUU- -5' |
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9280 | 5' | -58.7 | NC_002512.2 | + | 83966 | 0.66 | 0.832931 |
Target: 5'- aGUCCcggcgGCGGauGCCcGGCGCGGGGc- -3' miRNA: 3'- -CAGGa----UGCCcgUGGaUCGCGCCCUuu -5' |
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9280 | 5' | -58.7 | NC_002512.2 | + | 90110 | 0.67 | 0.815616 |
Target: 5'- uGUCUUcuggaucGCGGGCGCCcgguGCGCGaGGGc- -3' miRNA: 3'- -CAGGA-------UGCCCGUGGau--CGCGC-CCUuu -5' |
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9280 | 5' | -58.7 | NC_002512.2 | + | 91879 | 0.66 | 0.863763 |
Target: 5'- cGUCCggcGCGGGCGgC-GGCGCGGc--- -3' miRNA: 3'- -CAGGa--UGCCCGUgGaUCGCGCCcuuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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