miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9280 5' -58.7 NC_002512.2 + 75697 1.05 0.003693
Target:  5'- gGUCCUACGGGCACCUAGCGCGGGAAAa -3'
miRNA:   3'- -CAGGAUGCCCGUGGAUCGCGCCCUUU- -5'
9280 5' -58.7 NC_002512.2 + 98568 0.74 0.395393
Target:  5'- aUCCgGCGGGCGCCUcgGGCGgCGGGu-- -3'
miRNA:   3'- cAGGaUGCCCGUGGA--UCGC-GCCCuuu -5'
9280 5' -58.7 NC_002512.2 + 137200 0.72 0.529676
Target:  5'- gGUCCgcccgguggGCGGcGCGCCcGGCGCGGGc-- -3'
miRNA:   3'- -CAGGa--------UGCC-CGUGGaUCGCGCCCuuu -5'
9280 5' -58.7 NC_002512.2 + 204959 0.71 0.558669
Target:  5'- gGUCgCUGCGGGCcgagcccgacGCCgcgGGCGaCGGGGAc -3'
miRNA:   3'- -CAG-GAUGCCCG----------UGGa--UCGC-GCCCUUu -5'
9280 5' -58.7 NC_002512.2 + 169258 0.71 0.568436
Target:  5'- uGUCCUGUGGGUgggaGCCaAGUGUGGGAGGg -3'
miRNA:   3'- -CAGGAUGCCCG----UGGaUCGCGCCCUUU- -5'
9280 5' -58.7 NC_002512.2 + 169188 0.71 0.568436
Target:  5'- uGUCCUGUGGGUgggaGCCaAGUGUGGGAGGg -3'
miRNA:   3'- -CAGGAUGCCCG----UGGaUCGCGCCCUUU- -5'
9280 5' -58.7 NC_002512.2 + 100043 0.71 0.597966
Target:  5'- cUCCgcCGGGCGCUgAGaCGCGGGGGc -3'
miRNA:   3'- cAGGauGCCCGUGGaUC-GCGCCCUUu -5'
9280 5' -58.7 NC_002512.2 + 149427 0.71 0.607866
Target:  5'- -aCCgcgGCGGGgGCg-GGCGCGGGggGa -3'
miRNA:   3'- caGGa--UGCCCgUGgaUCGCGCCCuuU- -5'
9280 5' -58.7 NC_002512.2 + 103027 0.7 0.627709
Target:  5'- aGUCCaccACGGGCucguagaagACCgggggcaggAGCGCGGGGAAc -3'
miRNA:   3'- -CAGGa--UGCCCG---------UGGa--------UCGCGCCCUUU- -5'
9280 5' -58.7 NC_002512.2 + 4439 0.7 0.627709
Target:  5'- -aCCgGCgGGGUGCCgGGCGCGGGGGu -3'
miRNA:   3'- caGGaUG-CCCGUGGaUCGCGCCCUUu -5'
9280 5' -58.7 NC_002512.2 + 212150 0.7 0.637638
Target:  5'- cGUCg-GCGGGCA-CUGGCGgCGGGAc- -3'
miRNA:   3'- -CAGgaUGCCCGUgGAUCGC-GCCCUuu -5'
9280 5' -58.7 NC_002512.2 + 96597 0.7 0.657478
Target:  5'- gGUCCUcUGGGgACCggAGCGCGGaGAc- -3'
miRNA:   3'- -CAGGAuGCCCgUGGa-UCGCGCC-CUuu -5'
9280 5' -58.7 NC_002512.2 + 101600 0.7 0.667374
Target:  5'- gGUCgUGCGGGCggccgucgGCCcGGCGCcGGGAc- -3'
miRNA:   3'- -CAGgAUGCCCG--------UGGaUCGCG-CCCUuu -5'
9280 5' -58.7 NC_002512.2 + 106760 0.69 0.677242
Target:  5'- cGUCCcccgggACGGcCGCCgacGGCGCGGGAc- -3'
miRNA:   3'- -CAGGa-----UGCCcGUGGa--UCGCGCCCUuu -5'
9280 5' -58.7 NC_002512.2 + 183487 0.69 0.696866
Target:  5'- cGUgCUGCGGGcCGCCUacGGCcGCGaGGggGa -3'
miRNA:   3'- -CAgGAUGCCC-GUGGA--UCG-CGC-CCuuU- -5'
9280 5' -58.7 NC_002512.2 + 209865 0.69 0.697842
Target:  5'- -gCCUGCGGGaCGCCggcuacuacguggucGGuCGCGGGGAGc -3'
miRNA:   3'- caGGAUGCCC-GUGGa--------------UC-GCGCCCUUU- -5'
9280 5' -58.7 NC_002512.2 + 38651 0.69 0.706605
Target:  5'- uGUCC-GCGGGUACCgaggaGGC-CGGGGAc -3'
miRNA:   3'- -CAGGaUGCCCGUGGa----UCGcGCCCUUu -5'
9280 5' -58.7 NC_002512.2 + 118591 0.69 0.706605
Target:  5'- gGUCCcagacccCGGGCGUCUGGcCGCGGGAc- -3'
miRNA:   3'- -CAGGau-----GCCCGUGGAUC-GCGCCCUuu -5'
9280 5' -58.7 NC_002512.2 + 171657 0.68 0.735435
Target:  5'- -cCCUguuGCGGGaCAUCUAcgcGCGCGGGGu- -3'
miRNA:   3'- caGGA---UGCCC-GUGGAU---CGCGCCCUuu -5'
9280 5' -58.7 NC_002512.2 + 228404 0.68 0.735435
Target:  5'- uGUCCgggggACgGGGCGCUggGGgGCGGGGGc -3'
miRNA:   3'- -CAGGa----UG-CCCGUGGa-UCgCGCCCUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.