miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9280 5' -58.7 NC_002512.2 + 75697 1.05 0.003693
Target:  5'- gGUCCUACGGGCACCUAGCGCGGGAAAa -3'
miRNA:   3'- -CAGGAUGCCCGUGGAUCGCGCCCUUU- -5'
9280 5' -58.7 NC_002512.2 + 98088 0.67 0.816458
Target:  5'- uGUCCgagcggaugACGGGgAC--GGCGCGGGAc- -3'
miRNA:   3'- -CAGGa--------UGCCCgUGgaUCGCGCCCUuu -5'
9280 5' -58.7 NC_002512.2 + 21447 0.66 0.832931
Target:  5'- cGUCCgacucgauCGGGgGCC-GGCGCcGGGAGc -3'
miRNA:   3'- -CAGGau------GCCCgUGGaUCGCG-CCCUUu -5'
9280 5' -58.7 NC_002512.2 + 102278 0.66 0.870994
Target:  5'- -cCCUACGGGCuCCUGGCcaccacCGuGGAc- -3'
miRNA:   3'- caGGAUGCCCGuGGAUCGc-----GC-CCUuu -5'
9280 5' -58.7 NC_002512.2 + 169258 0.71 0.568436
Target:  5'- uGUCCUGUGGGUgggaGCCaAGUGUGGGAGGg -3'
miRNA:   3'- -CAGGAUGCCCG----UGGaUCGCGCCCUUU- -5'
9280 5' -58.7 NC_002512.2 + 100043 0.71 0.597966
Target:  5'- cUCCgcCGGGCGCUgAGaCGCGGGGGc -3'
miRNA:   3'- cAGGauGCCCGUGGaUC-GCGCCCUUu -5'
9280 5' -58.7 NC_002512.2 + 101600 0.7 0.667374
Target:  5'- gGUCgUGCGGGCggccgucgGCCcGGCGCcGGGAc- -3'
miRNA:   3'- -CAGgAUGCCCG--------UGGaUCGCG-CCCUuu -5'
9280 5' -58.7 NC_002512.2 + 38651 0.69 0.706605
Target:  5'- uGUCC-GCGGGUACCgaggaGGC-CGGGGAc -3'
miRNA:   3'- -CAGGaUGCCCGUGGa----UCGcGCCCUUu -5'
9280 5' -58.7 NC_002512.2 + 169154 0.68 0.772651
Target:  5'- gGUCUUuggGCGGGaGCCaAGUGUGGGAGGg -3'
miRNA:   3'- -CAGGA---UGCCCgUGGaUCGCGCCCUUU- -5'
9280 5' -58.7 NC_002512.2 + 82194 0.67 0.816458
Target:  5'- cGUCCgccguCGGGCcggcguCCUcccGGgGCGGGAAGc -3'
miRNA:   3'- -CAGGau---GCCCGu-----GGA---UCgCGCCCUUU- -5'
9280 5' -58.7 NC_002512.2 + 32565 0.67 0.781681
Target:  5'- -gCCgcCGGGCGCCgcgGGUGcCGGGGu- -3'
miRNA:   3'- caGGauGCCCGUGGa--UCGC-GCCCUuu -5'
9280 5' -58.7 NC_002512.2 + 5209 0.68 0.772651
Target:  5'- -aCC-GCGGGCcaGCCgacGGCgGCGGGAAAg -3'
miRNA:   3'- caGGaUGCCCG--UGGa--UCG-CGCCCUUU- -5'
9280 5' -58.7 NC_002512.2 + 98568 0.74 0.395393
Target:  5'- aUCCgGCGGGCGCCUcgGGCGgCGGGu-- -3'
miRNA:   3'- cAGGaUGCCCGUGGA--UCGC-GCCCuuu -5'
9280 5' -58.7 NC_002512.2 + 67647 0.67 0.781681
Target:  5'- cGUCC-ACGGGCcCCcGGaCGCGGGc-- -3'
miRNA:   3'- -CAGGaUGCCCGuGGaUC-GCGCCCuuu -5'
9280 5' -58.7 NC_002512.2 + 137200 0.72 0.529676
Target:  5'- gGUCCgcccgguggGCGGcGCGCCcGGCGCGGGc-- -3'
miRNA:   3'- -CAGGa--------UGCC-CGUGGaUCGCGCCCuuu -5'
9280 5' -58.7 NC_002512.2 + 118591 0.69 0.706605
Target:  5'- gGUCCcagacccCGGGCGUCUGGcCGCGGGAc- -3'
miRNA:   3'- -CAGGau-----GCCCGUGGAUC-GCGCCCUuu -5'
9280 5' -58.7 NC_002512.2 + 90110 0.67 0.815616
Target:  5'- uGUCUUcuggaucGCGGGCGCCcgguGCGCGaGGGc- -3'
miRNA:   3'- -CAGGA-------UGCCCGUGGau--CGCGC-CCUuu -5'
9280 5' -58.7 NC_002512.2 + 83966 0.66 0.832931
Target:  5'- aGUCCcggcgGCGGauGCCcGGCGCGGGGc- -3'
miRNA:   3'- -CAGGa----UGCCcgUGGaUCGCGCCCUuu -5'
9280 5' -58.7 NC_002512.2 + 169188 0.71 0.568436
Target:  5'- uGUCCUGUGGGUgggaGCCaAGUGUGGGAGGg -3'
miRNA:   3'- -CAGGAUGCCCG----UGGaUCGCGCCCUUU- -5'
9280 5' -58.7 NC_002512.2 + 4439 0.7 0.627709
Target:  5'- -aCCgGCgGGGUGCCgGGCGCGGGGGu -3'
miRNA:   3'- caGGaUG-CCCGUGGaUCGCGCCCUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.