miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9281 3' -53.2 NC_002512.2 + 102465 0.68 0.973408
Target:  5'- cGCGGAG--GAGGGcGCgCCCGUcgcggUGGCg -3'
miRNA:   3'- cCGCCUCagUUCCUaUG-GGGUA-----ACCG- -5'
9281 3' -53.2 NC_002512.2 + 18298 0.68 0.973408
Target:  5'- cGGCGGAG-CAgaaggggaugGGGAcGCCCCGcauGCg -3'
miRNA:   3'- -CCGCCUCaGU----------UCCUaUGGGGUaacCG- -5'
9281 3' -53.2 NC_002512.2 + 202520 0.68 0.973408
Target:  5'- aGGCGGAGgcggcggCGGGGGcggacgACCCag--GGCu -3'
miRNA:   3'- -CCGCCUCa------GUUCCUa-----UGGGguaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 143582 0.68 0.973408
Target:  5'- cGGCGGAG--AGGGAggcGCCCUugcGUgcgGGCc -3'
miRNA:   3'- -CCGCCUCagUUCCUa--UGGGG---UAa--CCG- -5'
9281 3' -53.2 NC_002512.2 + 19895 0.68 0.970663
Target:  5'- aGGCGGucgCgGAGGA-ACCCCgggaagccGUUGGCg -3'
miRNA:   3'- -CCGCCucaG-UUCCUaUGGGG--------UAACCG- -5'
9281 3' -53.2 NC_002512.2 + 187685 0.68 0.970663
Target:  5'- gGGCGGAGgCAccGGGAacccgaACCCCcgacccUGGCu -3'
miRNA:   3'- -CCGCCUCaGU--UCCUa-----UGGGGua----ACCG- -5'
9281 3' -53.2 NC_002512.2 + 94666 0.68 0.970663
Target:  5'- cGGCccGGGGcCGGGGGgccCCCCGgcccgcUGGCg -3'
miRNA:   3'- -CCG--CCUCaGUUCCUau-GGGGUa-----ACCG- -5'
9281 3' -53.2 NC_002512.2 + 101797 0.68 0.970663
Target:  5'- cGGCGGAGcgcuucCGAGGAgGCUUCcugGGCg -3'
miRNA:   3'- -CCGCCUCa-----GUUCCUaUGGGGuaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 182957 0.68 0.967721
Target:  5'- cGGUGGAugaaGUCGAaguGGuagGCCCCGgucGGCa -3'
miRNA:   3'- -CCGCCU----CAGUU---CCua-UGGGGUaa-CCG- -5'
9281 3' -53.2 NC_002512.2 + 120 0.68 0.967721
Target:  5'- cGGCGGAGaaAAGGAgaaACgCCGgggagccgGGCg -3'
miRNA:   3'- -CCGCCUCagUUCCUa--UGgGGUaa------CCG- -5'
9281 3' -53.2 NC_002512.2 + 219830 0.68 0.967721
Target:  5'- aGGgGGucGGUCGGGGGguccGgCCCGggGGCg -3'
miRNA:   3'- -CCgCC--UCAGUUCCUa---UgGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 150308 0.68 0.964899
Target:  5'- aGGCGGAGgagcgagaccggcggCGAGGAcGCCgCGgcGGUg -3'
miRNA:   3'- -CCGCCUCa--------------GUUCCUaUGGgGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 34357 0.68 0.964575
Target:  5'- gGGCGGAG--GAGG-UACCCCgagaaguaGUaGGCg -3'
miRNA:   3'- -CCGCCUCagUUCCuAUGGGG--------UAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 121227 0.68 0.964575
Target:  5'- cGGCGGGGaguaCAuguGGAccGCCCCGUgGGUc -3'
miRNA:   3'- -CCGCCUCa---GUu--CCUa-UGGGGUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 207006 0.68 0.964575
Target:  5'- cGCGGGGUCAGcauGGUGgCCCAgUUGuGCa -3'
miRNA:   3'- cCGCCUCAGUUc--CUAUgGGGU-AAC-CG- -5'
9281 3' -53.2 NC_002512.2 + 227960 0.68 0.961221
Target:  5'- cGCGGGGgagccggaGAGGAggGCCCCGgcgccgagGGCc -3'
miRNA:   3'- cCGCCUCag------UUCCUa-UGGGGUaa------CCG- -5'
9281 3' -53.2 NC_002512.2 + 219492 0.68 0.961221
Target:  5'- gGGCGG-GUCAgacgAGGAUGCUggCCGgcguucGGCa -3'
miRNA:   3'- -CCGCCuCAGU----UCCUAUGG--GGUaa----CCG- -5'
9281 3' -53.2 NC_002512.2 + 103481 0.69 0.957653
Target:  5'- aGGCGGcGUCGAcGGcgcccgggGCCCCg--GGCg -3'
miRNA:   3'- -CCGCCuCAGUU-CCua------UGGGGuaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 157037 0.69 0.957653
Target:  5'- cGGCccGGAG-CGAGGA--CCCCGgcaaGGCg -3'
miRNA:   3'- -CCG--CCUCaGUUCCUauGGGGUaa--CCG- -5'
9281 3' -53.2 NC_002512.2 + 153640 0.69 0.953866
Target:  5'- cGGCGGAcGggagCGGGGGcacgcuccucACCCUcgUGGCg -3'
miRNA:   3'- -CCGCCU-Ca---GUUCCUa---------UGGGGuaACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.