miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9281 3' -53.2 NC_002512.2 + 104843 0.67 0.984407
Target:  5'- cGGCuGGAGcggCGGGGAgggACCUCGcgcagcgGGCg -3'
miRNA:   3'- -CCG-CCUCa--GUUCCUa--UGGGGUaa-----CCG- -5'
9281 3' -53.2 NC_002512.2 + 105168 0.67 0.984407
Target:  5'- cGGCGGGGaacAGGugcacgcGCCCCAggacGGCg -3'
miRNA:   3'- -CCGCCUCaguUCCua-----UGGGGUaa--CCG- -5'
9281 3' -53.2 NC_002512.2 + 57326 0.67 0.984407
Target:  5'- cGCGGAGgaacgucacgCAGGGGgagcugGCCUgGUUGGg -3'
miRNA:   3'- cCGCCUCa---------GUUCCUa-----UGGGgUAACCg -5'
9281 3' -53.2 NC_002512.2 + 87516 0.67 0.984407
Target:  5'- cGCGGAGcCGAuggcGGGUAUCuCCGUUcucGGCu -3'
miRNA:   3'- cCGCCUCaGUU----CCUAUGG-GGUAA---CCG- -5'
9281 3' -53.2 NC_002512.2 + 121434 0.67 0.98331
Target:  5'- cGCGGAGUCGgccccggagcccugaGGGGUccGCCCCGc--GCc -3'
miRNA:   3'- cCGCCUCAGU---------------UCCUA--UGGGGUaacCG- -5'
9281 3' -53.2 NC_002512.2 + 81946 0.67 0.982547
Target:  5'- gGGCGGAGgggccggcgCGcGGugaGCCCCGggcggguggUGGCg -3'
miRNA:   3'- -CCGCCUCa--------GUuCCua-UGGGGUa--------ACCG- -5'
9281 3' -53.2 NC_002512.2 + 82429 0.67 0.982547
Target:  5'- cGGCGGAGgggaCGAGGggGCgucggucccgcuCCCGaaGGCg -3'
miRNA:   3'- -CCGCCUCa---GUUCCuaUG------------GGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 136390 0.67 0.982547
Target:  5'- cGGCcaGAG-CAAGGAgggaaccaACCCCAUcUGGUa -3'
miRNA:   3'- -CCGc-CUCaGUUCCUa-------UGGGGUA-ACCG- -5'
9281 3' -53.2 NC_002512.2 + 96626 0.67 0.982547
Target:  5'- cGGgGGAGggCGAGGAaACCgCGaccggGGCg -3'
miRNA:   3'- -CCgCCUCa-GUUCCUaUGGgGUaa---CCG- -5'
9281 3' -53.2 NC_002512.2 + 133646 0.67 0.980734
Target:  5'- uGGCGGAGUCcGGGGcggucGCCgCCGccgccgcggccgccgUGGCc -3'
miRNA:   3'- -CCGCCUCAGuUCCUa----UGG-GGUa--------------ACCG- -5'
9281 3' -53.2 NC_002512.2 + 229524 0.67 0.980525
Target:  5'- cGGCGGAGaaAAGGAgaACgCCGgggagccgGGCg -3'
miRNA:   3'- -CCGCCUCagUUCCUa-UGgGGUaa------CCG- -5'
9281 3' -53.2 NC_002512.2 + 159359 0.67 0.980525
Target:  5'- cGGCgucGGGGUCGGGGcg-UCCCAUUcGCg -3'
miRNA:   3'- -CCG---CCUCAGUUCCuauGGGGUAAcCG- -5'
9281 3' -53.2 NC_002512.2 + 28081 0.67 0.980525
Target:  5'- cGGCGGAGaCGGcGGAgaggucgccGCCCCGUccGCg -3'
miRNA:   3'- -CCGCCUCaGUU-CCUa--------UGGGGUAacCG- -5'
9281 3' -53.2 NC_002512.2 + 177274 0.67 0.978332
Target:  5'- --gGGAGUcCAGGGAcuugGCCagGUUGGCg -3'
miRNA:   3'- ccgCCUCA-GUUCCUa---UGGggUAACCG- -5'
9281 3' -53.2 NC_002512.2 + 18919 0.67 0.978332
Target:  5'- aGGCGcGAcaCAGGGcccggacgACCUCGUUGGCc -3'
miRNA:   3'- -CCGC-CUcaGUUCCua------UGGGGUAACCG- -5'
9281 3' -53.2 NC_002512.2 + 118389 0.67 0.978332
Target:  5'- cGGCGGAcGUCc-GGAcuCUCCGUcuacUGGCa -3'
miRNA:   3'- -CCGCCU-CAGuuCCUauGGGGUA----ACCG- -5'
9281 3' -53.2 NC_002512.2 + 130852 0.67 0.978332
Target:  5'- cGGCGGucGGgCGAGGc--CCCCAccgGGCg -3'
miRNA:   3'- -CCGCC--UCaGUUCCuauGGGGUaa-CCG- -5'
9281 3' -53.2 NC_002512.2 + 88135 0.68 0.975962
Target:  5'- cGGCGGAuGUaGGGGAcgauCCgCCcgUGGCc -3'
miRNA:   3'- -CCGCCU-CAgUUCCUau--GG-GGuaACCG- -5'
9281 3' -53.2 NC_002512.2 + 72905 0.68 0.975962
Target:  5'- cGGCGGccgaAGUUGcccAGGAUGCCgaCGUcGGCg -3'
miRNA:   3'- -CCGCC----UCAGU---UCCUAUGGg-GUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 127846 0.68 0.975962
Target:  5'- -cCGGAGUCc-GGAgcgggAUCCCGUgGGCg -3'
miRNA:   3'- ccGCCUCAGuuCCUa----UGGGGUAaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.