miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9281 3' -53.2 NC_002512.2 + 108156 0.67 0.985949
Target:  5'- aGGaCGGAGggccucgucagcaUCAcGGucGCCCCggUGGCg -3'
miRNA:   3'- -CC-GCCUC-------------AGUuCCuaUGGGGuaACCG- -5'
9281 3' -53.2 NC_002512.2 + 106789 0.66 0.987672
Target:  5'- uGGuCGGGGUCGGGGucgACgUCGggagggGGCg -3'
miRNA:   3'- -CC-GCCUCAGUUCCua-UGgGGUaa----CCG- -5'
9281 3' -53.2 NC_002512.2 + 102520 0.66 0.987672
Target:  5'- cGCGGccGUCGGGGGUcagGCCCCc--GGUu -3'
miRNA:   3'- cCGCCu-CAGUUCCUA---UGGGGuaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 109172 0.66 0.987672
Target:  5'- cGCGGGG-CcGGGAUgaagaGCCCCAggUGcGCc -3'
miRNA:   3'- cCGCCUCaGuUCCUA-----UGGGGUa-AC-CG- -5'
9281 3' -53.2 NC_002512.2 + 67665 0.66 0.988956
Target:  5'- cGCGGGcucgaccGUCGAGuGGUGCCCguugUGGUg -3'
miRNA:   3'- cCGCCU-------CAGUUC-CUAUGGGgua-ACCG- -5'
9281 3' -53.2 NC_002512.2 + 96 0.66 0.989092
Target:  5'- cGGCGGGGggaGAGGAgGCCggCAggaGGCg -3'
miRNA:   3'- -CCGCCUCag-UUCCUaUGGg-GUaa-CCG- -5'
9281 3' -53.2 NC_002512.2 + 32206 0.66 0.989092
Target:  5'- gGGCGGGuGUCcguuGAGGAgggcguccACCUCGUcgGGCc -3'
miRNA:   3'- -CCGCCU-CAG----UUCCUa-------UGGGGUAa-CCG- -5'
9281 3' -53.2 NC_002512.2 + 229500 0.66 0.989092
Target:  5'- cGGCGGGGggaGAGGAgGCCggCAggaGGCg -3'
miRNA:   3'- -CCGCCUCag-UUCCUaUGGg-GUaa-CCG- -5'
9281 3' -53.2 NC_002512.2 + 113605 0.66 0.990862
Target:  5'- gGGCGGGGUacugguggucCGucAGGGUGCUCCGcagcaccugcagggUGGCc -3'
miRNA:   3'- -CCGCCUCA----------GU--UCCUAUGGGGUa-------------ACCG- -5'
9281 3' -53.2 NC_002512.2 + 177175 0.66 0.991548
Target:  5'- gGGCGGgaacgGGUCAGuuaucuGAUAUCCCucaaggUGGCu -3'
miRNA:   3'- -CCGCC-----UCAGUUc-----CUAUGGGGua----ACCG- -5'
9281 3' -53.2 NC_002512.2 + 34073 0.66 0.991548
Target:  5'- cGGCGGcGUCGAcGAUGuCCCCGca-GCg -3'
miRNA:   3'- -CCGCCuCAGUUcCUAU-GGGGUaacCG- -5'
9281 3' -53.2 NC_002512.2 + 113289 0.66 0.992599
Target:  5'- aGGCgGGGGUCGugcAGGGcGCUCaCGUaGGCc -3'
miRNA:   3'- -CCG-CCUCAGU---UCCUaUGGG-GUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 49065 0.66 0.992599
Target:  5'- cGGCGGAcGcCAAGGcgAUCCCGa--GCu -3'
miRNA:   3'- -CCGCCU-CaGUUCCuaUGGGGUaacCG- -5'
9281 3' -53.2 NC_002512.2 + 118074 0.66 0.992599
Target:  5'- cGCGGAGg--GGGcgGCUCCGgcgccGGCg -3'
miRNA:   3'- cCGCCUCaguUCCuaUGGGGUaa---CCG- -5'
9281 3' -53.2 NC_002512.2 + 133317 0.66 0.992599
Target:  5'- aGGCGG-GagGAGGA--UCCUAUaaaUGGCg -3'
miRNA:   3'- -CCGCCuCagUUCCUauGGGGUA---ACCG- -5'
9281 3' -53.2 NC_002512.2 + 185876 0.66 0.992599
Target:  5'- -cCGGAG-CAAGGucACCCCcucaacgugUGGCg -3'
miRNA:   3'- ccGCCUCaGUUCCuaUGGGGua-------ACCG- -5'
9281 3' -53.2 NC_002512.2 + 175805 0.66 0.992599
Target:  5'- uGGCGGcGUCccGGcgGCUCCGcucguccgUGGCg -3'
miRNA:   3'- -CCGCCuCAGuuCCuaUGGGGUa-------ACCG- -5'
9281 3' -53.2 NC_002512.2 + 132104 0.66 0.992599
Target:  5'- cGGacCGGGGcUCGAGGGccGCCCgGUaGGCc -3'
miRNA:   3'- -CC--GCCUC-AGUUCCUa-UGGGgUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 220987 0.66 0.991548
Target:  5'- uGGCcaggaGGGUCGAG--UGCCCCAacGGCu -3'
miRNA:   3'- -CCGc----CUCAGUUCcuAUGGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 160729 0.66 0.991548
Target:  5'- cGGgGGGGauuUCGGGGGgaacggcgccgGCCCCg--GGCa -3'
miRNA:   3'- -CCgCCUC---AGUUCCUa----------UGGGGuaaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.