miRNA display CGI


Results 41 - 60 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9281 3' -53.2 NC_002512.2 + 101797 0.68 0.970663
Target:  5'- cGGCGGAGcgcuucCGAGGAgGCUUCcugGGCg -3'
miRNA:   3'- -CCGCCUCa-----GUUCCUaUGGGGuaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 102465 0.68 0.973408
Target:  5'- cGCGGAG--GAGGGcGCgCCCGUcgcggUGGCg -3'
miRNA:   3'- cCGCCUCagUUCCUaUG-GGGUA-----ACCG- -5'
9281 3' -53.2 NC_002512.2 + 102520 0.66 0.987672
Target:  5'- cGCGGccGUCGGGGGUcagGCCCCc--GGUu -3'
miRNA:   3'- cCGCCu-CAGUUCCUA---UGGGGuaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 103481 0.69 0.957653
Target:  5'- aGGCGGcGUCGAcGGcgcccgggGCCCCg--GGCg -3'
miRNA:   3'- -CCGCCuCAGUU-CCua------UGGGGuaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 104790 0.69 0.949858
Target:  5'- uGGCGGGGUCcgcgcgcggcGGGuuGUACUCCAg-GGCg -3'
miRNA:   3'- -CCGCCUCAGu---------UCC--UAUGGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 104843 0.67 0.984407
Target:  5'- cGGCuGGAGcggCGGGGAgggACCUCGcgcagcgGGCg -3'
miRNA:   3'- -CCG-CCUCa--GUUCCUa--UGGGGUaa-----CCG- -5'
9281 3' -53.2 NC_002512.2 + 105168 0.67 0.984407
Target:  5'- cGGCGGGGaacAGGugcacgcGCCCCAggacGGCg -3'
miRNA:   3'- -CCGCCUCaguUCCua-----UGGGGUaa--CCG- -5'
9281 3' -53.2 NC_002512.2 + 106789 0.66 0.987672
Target:  5'- uGGuCGGGGUCGGGGucgACgUCGggagggGGCg -3'
miRNA:   3'- -CC-GCCUCAGUUCCua-UGgGGUaa----CCG- -5'
9281 3' -53.2 NC_002512.2 + 108156 0.67 0.985949
Target:  5'- aGGaCGGAGggccucgucagcaUCAcGGucGCCCCggUGGCg -3'
miRNA:   3'- -CC-GCCUC-------------AGUuCCuaUGGGGuaACCG- -5'
9281 3' -53.2 NC_002512.2 + 108427 0.7 0.936469
Target:  5'- cGGCGGcGGgcgCGGGGcggACCCCucagGGCu -3'
miRNA:   3'- -CCGCC-UCa--GUUCCua-UGGGGuaa-CCG- -5'
9281 3' -53.2 NC_002512.2 + 108437 0.66 0.987672
Target:  5'- gGGCcgGGGGcCGGGGGgucccuCCCCGggcGGCg -3'
miRNA:   3'- -CCG--CCUCaGUUCCUau----GGGGUaa-CCG- -5'
9281 3' -53.2 NC_002512.2 + 109172 0.66 0.987672
Target:  5'- cGCGGGG-CcGGGAUgaagaGCCCCAggUGcGCc -3'
miRNA:   3'- cCGCCUCaGuUCCUA-----UGGGGUa-AC-CG- -5'
9281 3' -53.2 NC_002512.2 + 111832 0.66 0.987672
Target:  5'- cGCGGAGUCGAgcccgggcacGGGccacgGCCUCcUUGGUc -3'
miRNA:   3'- cCGCCUCAGUU----------CCUa----UGGGGuAACCG- -5'
9281 3' -53.2 NC_002512.2 + 113289 0.66 0.992599
Target:  5'- aGGCgGGGGUCGugcAGGGcGCUCaCGUaGGCc -3'
miRNA:   3'- -CCG-CCUCAGU---UCCUaUGGG-GUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 113605 0.66 0.990862
Target:  5'- gGGCGGGGUacugguggucCGucAGGGUGCUCCGcagcaccugcagggUGGCc -3'
miRNA:   3'- -CCGCCUCA----------GU--UCCUAUGGGGUa-------------ACCG- -5'
9281 3' -53.2 NC_002512.2 + 116895 0.7 0.926388
Target:  5'- cGGCGGGGcCGGGGcggGCUCCucggacGGCg -3'
miRNA:   3'- -CCGCCUCaGUUCCua-UGGGGuaa---CCG- -5'
9281 3' -53.2 NC_002512.2 + 118074 0.66 0.992599
Target:  5'- cGCGGAGg--GGGcgGCUCCGgcgccGGCg -3'
miRNA:   3'- cCGCCUCaguUCCuaUGGGGUaa---CCG- -5'
9281 3' -53.2 NC_002512.2 + 118389 0.67 0.978332
Target:  5'- cGGCGGAcGUCc-GGAcuCUCCGUcuacUGGCa -3'
miRNA:   3'- -CCGCCU-CAGuuCCUauGGGGUA----ACCG- -5'
9281 3' -53.2 NC_002512.2 + 121227 0.68 0.964575
Target:  5'- cGGCGGGGaguaCAuguGGAccGCCCCGUgGGUc -3'
miRNA:   3'- -CCGCCUCa---GUu--CCUa-UGGGGUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 121434 0.67 0.98331
Target:  5'- cGCGGAGUCGgccccggagcccugaGGGGUccGCCCCGc--GCc -3'
miRNA:   3'- cCGCCUCAGU---------------UCCUA--UGGGGUaacCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.