miRNA display CGI


Results 21 - 40 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9281 3' -53.2 NC_002512.2 + 49065 0.66 0.992599
Target:  5'- cGGCGGAcGcCAAGGcgAUCCCGa--GCu -3'
miRNA:   3'- -CCGCCU-CaGUUCCuaUGGGGUaacCG- -5'
9281 3' -53.2 NC_002512.2 + 57326 0.67 0.984407
Target:  5'- cGCGGAGgaacgucacgCAGGGGgagcugGCCUgGUUGGg -3'
miRNA:   3'- cCGCCUCa---------GUUCCUa-----UGGGgUAACCg -5'
9281 3' -53.2 NC_002512.2 + 67665 0.66 0.988956
Target:  5'- cGCGGGcucgaccGUCGAGuGGUGCCCguugUGGUg -3'
miRNA:   3'- cCGCCU-------CAGUUC-CUAUGGGgua-ACCG- -5'
9281 3' -53.2 NC_002512.2 + 72905 0.68 0.975962
Target:  5'- cGGCGGccgaAGUUGcccAGGAUGCCgaCGUcGGCg -3'
miRNA:   3'- -CCGCC----UCAGU---UCCUAUGGg-GUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 74829 0.66 0.989092
Target:  5'- cGGCGGAcgaacaacucgGuUCGAGGGgccUCCCGcgGGCg -3'
miRNA:   3'- -CCGCCU-----------C-AGUUCCUau-GGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 75814 1.15 0.003678
Target:  5'- gGGCGGAGUCAAGGAUACCCCAUUGGCg -3'
miRNA:   3'- -CCGCCUCAGUUCCUAUGGGGUAACCG- -5'
9281 3' -53.2 NC_002512.2 + 76032 1 0.034406
Target:  5'- gGGUGGAGUUGAGGGUAUCCCAUUGGCg -3'
miRNA:   3'- -CCGCCUCAGUUCCUAUGGGGUAACCG- -5'
9281 3' -53.2 NC_002512.2 + 77192 0.66 0.989092
Target:  5'- cGCGGAcGaUCGAGGAgGCCCCccu-GCg -3'
miRNA:   3'- cCGCCU-C-AGUUCCUaUGGGGuaacCG- -5'
9281 3' -53.2 NC_002512.2 + 80824 0.7 0.936469
Target:  5'- -uCGGcGUCGGcGGAgggGCCCCGUaGGCg -3'
miRNA:   3'- ccGCCuCAGUU-CCUa--UGGGGUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 81946 0.67 0.982547
Target:  5'- gGGCGGAGgggccggcgCGcGGugaGCCCCGggcggguggUGGCg -3'
miRNA:   3'- -CCGCCUCa--------GUuCCua-UGGGGUa--------ACCG- -5'
9281 3' -53.2 NC_002512.2 + 82429 0.67 0.982547
Target:  5'- cGGCGGAGgggaCGAGGggGCgucggucccgcuCCCGaaGGCg -3'
miRNA:   3'- -CCGCCUCa---GUUCCuaUG------------GGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 87516 0.67 0.984407
Target:  5'- cGCGGAGcCGAuggcGGGUAUCuCCGUUcucGGCu -3'
miRNA:   3'- cCGCCUCaGUU----CCUAUGG-GGUAA---CCG- -5'
9281 3' -53.2 NC_002512.2 + 88135 0.68 0.975962
Target:  5'- cGGCGGAuGUaGGGGAcgauCCgCCcgUGGCc -3'
miRNA:   3'- -CCGCCU-CAgUUCCUau--GG-GGuaACCG- -5'
9281 3' -53.2 NC_002512.2 + 91182 0.69 0.945624
Target:  5'- uGCGGgauccgGGUCAGGGAgACCgCCAcccggGGCa -3'
miRNA:   3'- cCGCC------UCAGUUCCUaUGG-GGUaa---CCG- -5'
9281 3' -53.2 NC_002512.2 + 94666 0.68 0.970663
Target:  5'- cGGCccGGGGcCGGGGGgccCCCCGgcccgcUGGCg -3'
miRNA:   3'- -CCG--CCUCaGUUCCUau-GGGGUa-----ACCG- -5'
9281 3' -53.2 NC_002512.2 + 95151 0.72 0.854679
Target:  5'- cGGCGG-GUCGAGGAccggagccuuCCCCAc-GGCc -3'
miRNA:   3'- -CCGCCuCAGUUCCUau--------GGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 95281 0.76 0.681697
Target:  5'- cGGCGGGGUC-GGGu--UCCCGUcGGCg -3'
miRNA:   3'- -CCGCCUCAGuUCCuauGGGGUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 96626 0.67 0.982547
Target:  5'- cGGgGGAGggCGAGGAaACCgCGaccggGGCg -3'
miRNA:   3'- -CCgCCUCa-GUUCCUaUGGgGUaa---CCG- -5'
9281 3' -53.2 NC_002512.2 + 99280 0.71 0.890591
Target:  5'- cGCGGGGUCGagcAGGAgGCCgaCGUUGGa -3'
miRNA:   3'- cCGCCUCAGU---UCCUaUGGg-GUAACCg -5'
9281 3' -53.2 NC_002512.2 + 100365 0.7 0.920446
Target:  5'- cGGCGuaggccagcugccGAGUCAgcAGGAgcgaGCUCCAgUUGGCg -3'
miRNA:   3'- -CCGC-------------CUCAGU--UCCUa---UGGGGU-AACCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.