miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9281 3' -53.2 NC_002512.2 + 160946 0.71 0.909522
Target:  5'- uGGgGGGGUCAcgagggGGGAUcCCCCcgaGGCc -3'
miRNA:   3'- -CCgCCUCAGU------UCCUAuGGGGuaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 126999 0.71 0.909522
Target:  5'- aGCGcGGGUCGuacccGGGUcCCCCGUaGGCg -3'
miRNA:   3'- cCGC-CUCAGUu----CCUAuGGGGUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 130479 0.71 0.909522
Target:  5'- gGGCGGAGaCGaagccgccccGGGAguccggACCCCGacgcUGGCg -3'
miRNA:   3'- -CCGCCUCaGU----------UCCUa-----UGGGGUa---ACCG- -5'
9281 3' -53.2 NC_002512.2 + 152476 0.71 0.911891
Target:  5'- gGGCGGGuGUCGAGGuuagGCgCCAUUuuguguuucgcgcugGGCa -3'
miRNA:   3'- -CCGCCU-CAGUUCCua--UGgGGUAA---------------CCG- -5'
9281 3' -53.2 NC_002512.2 + 100365 0.7 0.920446
Target:  5'- cGGCGuaggccagcugccGAGUCAgcAGGAgcgaGCUCCAgUUGGCg -3'
miRNA:   3'- -CCGC-------------CUCAGU--UCCUa---UGGGGU-AACCG- -5'
9281 3' -53.2 NC_002512.2 + 9754 0.7 0.920998
Target:  5'- cGGCGGAGcC--GGAcccgccGCCCCGcgUGGCg -3'
miRNA:   3'- -CCGCCUCaGuuCCUa-----UGGGGUa-ACCG- -5'
9281 3' -53.2 NC_002512.2 + 116895 0.7 0.926388
Target:  5'- cGGCGGGGcCGGGGcggGCUCCucggacGGCg -3'
miRNA:   3'- -CCGCCUCaGUUCCua-UGGGGuaa---CCG- -5'
9281 3' -53.2 NC_002512.2 + 223043 0.7 0.926388
Target:  5'- cGGCGaGGUCcGGGAggUGCCCC--UGGUc -3'
miRNA:   3'- -CCGCcUCAGuUCCU--AUGGGGuaACCG- -5'
9281 3' -53.2 NC_002512.2 + 108427 0.7 0.936469
Target:  5'- cGGCGGcGGgcgCGGGGcggACCCCucagGGCu -3'
miRNA:   3'- -CCGCC-UCa--GUUCCua-UGGGGuaa-CCG- -5'
9281 3' -53.2 NC_002512.2 + 80824 0.7 0.936469
Target:  5'- -uCGGcGUCGGcGGAgggGCCCCGUaGGCg -3'
miRNA:   3'- ccGCCuCAGUU-CCUa--UGGGGUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 127925 0.69 0.941162
Target:  5'- gGGCGGA-UCGguAGGGUACCCgA--GGCc -3'
miRNA:   3'- -CCGCCUcAGU--UCCUAUGGGgUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 4585 0.69 0.941162
Target:  5'- cGGCGGAG--GAGGcgGCgCCGcgGGCc -3'
miRNA:   3'- -CCGCCUCagUUCCuaUGgGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 125160 0.69 0.941162
Target:  5'- cGCGGAGagcuUCGAGGAcuucguggccgGCCCCuuccaggUGGCc -3'
miRNA:   3'- cCGCCUC----AGUUCCUa----------UGGGGua-----ACCG- -5'
9281 3' -53.2 NC_002512.2 + 221082 0.69 0.945624
Target:  5'- cGGCGGAacggcGUgGGGGAcGCCCUcc-GGCg -3'
miRNA:   3'- -CCGCCU-----CAgUUCCUaUGGGGuaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 91182 0.69 0.945624
Target:  5'- uGCGGgauccgGGUCAGGGAgACCgCCAcccggGGCa -3'
miRNA:   3'- cCGCC------UCAGUUCCUaUGG-GGUaa---CCG- -5'
9281 3' -53.2 NC_002512.2 + 138674 0.69 0.945624
Target:  5'- cGGUGGAcUCGcuGAacgUGCCCCGggUGGCg -3'
miRNA:   3'- -CCGCCUcAGUucCU---AUGGGGUa-ACCG- -5'
9281 3' -53.2 NC_002512.2 + 213350 0.69 0.945624
Target:  5'- -cCGGAGcCAGGGGgacGCCCgCGcUGGCg -3'
miRNA:   3'- ccGCCUCaGUUCCUa--UGGG-GUaACCG- -5'
9281 3' -53.2 NC_002512.2 + 158995 0.69 0.948191
Target:  5'- gGGCGGAGgc--GGcgGCCCCGgcguccgcgccgGGCg -3'
miRNA:   3'- -CCGCCUCaguuCCuaUGGGGUaa----------CCG- -5'
9281 3' -53.2 NC_002512.2 + 104790 0.69 0.949858
Target:  5'- uGGCGGGGUCcgcgcgcggcGGGuuGUACUCCAg-GGCg -3'
miRNA:   3'- -CCGCCUCAGu---------UCC--UAUGGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 211554 0.69 0.949858
Target:  5'- cGGCGuGuGcCGcGGGAUGuCCCCAUgcggGGCg -3'
miRNA:   3'- -CCGC-CuCaGU-UCCUAU-GGGGUAa---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.