miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9281 3' -53.2 NC_002512.2 + 75814 1.15 0.003678
Target:  5'- gGGCGGAGUCAAGGAUACCCCAUUGGCg -3'
miRNA:   3'- -CCGCCUCAGUUCCUAUGGGGUAACCG- -5'
9281 3' -53.2 NC_002512.2 + 76032 1 0.034406
Target:  5'- gGGUGGAGUUGAGGGUAUCCCAUUGGCg -3'
miRNA:   3'- -CCGCCUCAGUUCCUAUGGGGUAACCG- -5'
9281 3' -53.2 NC_002512.2 + 154032 0.77 0.601078
Target:  5'- aGCuacGUCAucGGAUACCCCAUUGGCu -3'
miRNA:   3'- cCGccuCAGUu-CCUAUGGGGUAACCG- -5'
9281 3' -53.2 NC_002512.2 + 95281 0.76 0.681697
Target:  5'- cGGCGGGGUC-GGGu--UCCCGUcGGCg -3'
miRNA:   3'- -CCGCCUCAGuUCCuauGGGGUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 125619 0.74 0.740702
Target:  5'- aGGCGuGGGUCAGGuauucGGUcACCCgGUUGGCc -3'
miRNA:   3'- -CCGC-CUCAGUUC-----CUA-UGGGgUAACCG- -5'
9281 3' -53.2 NC_002512.2 + 153803 0.73 0.796385
Target:  5'- cGGUcaGGAGaguuccguUUAcGGAUAUCCCAUUGGCu -3'
miRNA:   3'- -CCG--CCUC--------AGUuCCUAUGGGGUAACCG- -5'
9281 3' -53.2 NC_002512.2 + 127057 0.73 0.805209
Target:  5'- cGGCGGAGggaagcUCAucGGGUAUCCCGUUcccggagcggagGGCg -3'
miRNA:   3'- -CCGCCUC------AGUu-CCUAUGGGGUAA------------CCG- -5'
9281 3' -53.2 NC_002512.2 + 7255 0.73 0.805209
Target:  5'- cGGCGGAG-CGgcguccgucGGGAUcgggcgcgagGCCCCGggGGCc -3'
miRNA:   3'- -CCGCCUCaGU---------UCCUA----------UGGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 136185 0.73 0.821549
Target:  5'- cGGCGGGGUCGccGGGAUcgcgucgACgCCGgcGGCc -3'
miRNA:   3'- -CCGCCUCAGU--UCCUA-------UGgGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 128417 0.73 0.830735
Target:  5'- uGGCGGGGUCGccGGAgcccuCCUCGcgGGCg -3'
miRNA:   3'- -CCGCCUCAGUu-CCUau---GGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 4638 0.72 0.846885
Target:  5'- uGGCGGAGaaggagCAcGGGAgcggagGCCCCGccGGCg -3'
miRNA:   3'- -CCGCCUCa-----GU-UCCUa-----UGGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 95151 0.72 0.854679
Target:  5'- cGGCGG-GUCGAGGAccggagccuuCCCCAc-GGCc -3'
miRNA:   3'- -CCGCCuCAGUUCCUau--------GGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 9080 0.72 0.862276
Target:  5'- cGGCGGgaccacgagcgGGUCGAGGAcgauCCCCAgcaGGUc -3'
miRNA:   3'- -CCGCC-----------UCAGUUCCUau--GGGGUaa-CCG- -5'
9281 3' -53.2 NC_002512.2 + 25296 0.72 0.868209
Target:  5'- uGGUGGAGUCcaauccccagucGGGGUcGCCCCAccggagGGCg -3'
miRNA:   3'- -CCGCCUCAGu-----------UCCUA-UGGGGUaa----CCG- -5'
9281 3' -53.2 NC_002512.2 + 191316 0.71 0.876859
Target:  5'- cGGCGGGGUCAAGG-UGgUCUgc-GGCg -3'
miRNA:   3'- -CCGCCUCAGUUCCuAUgGGGuaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 226852 0.71 0.890591
Target:  5'- aGGCGGAGcaggccgcCAGGGAgGCCCgGgaGGCc -3'
miRNA:   3'- -CCGCCUCa-------GUUCCUaUGGGgUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 99280 0.71 0.890591
Target:  5'- cGCGGGGUCGagcAGGAgGCCgaCGUUGGa -3'
miRNA:   3'- cCGCCUCAGU---UCCUaUGGg-GUAACCg -5'
9281 3' -53.2 NC_002512.2 + 134162 0.71 0.897127
Target:  5'- cGGCGGGGaCGGGGAgccgucuuCCCCucccGGCc -3'
miRNA:   3'- -CCGCCUCaGUUCCUau------GGGGuaa-CCG- -5'
9281 3' -53.2 NC_002512.2 + 185857 0.71 0.903438
Target:  5'- aGCGGuacGUCGAGGAgggcGCCUCGggccgcUGGCa -3'
miRNA:   3'- cCGCCu--CAGUUCCUa---UGGGGUa-----ACCG- -5'
9281 3' -53.2 NC_002512.2 + 130479 0.71 0.909522
Target:  5'- gGGCGGAGaCGaagccgccccGGGAguccggACCCCGacgcUGGCg -3'
miRNA:   3'- -CCGCCUCaGU----------UCCUa-----UGGGGUa---ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.