miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9281 3' -53.2 NC_002512.2 + 96 0.66 0.989092
Target:  5'- cGGCGGGGggaGAGGAgGCCggCAggaGGCg -3'
miRNA:   3'- -CCGCCUCag-UUCCUaUGGg-GUaa-CCG- -5'
9281 3' -53.2 NC_002512.2 + 120 0.68 0.967721
Target:  5'- cGGCGGAGaaAAGGAgaaACgCCGgggagccgGGCg -3'
miRNA:   3'- -CCGCCUCagUUCCUa--UGgGGUaa------CCG- -5'
9281 3' -53.2 NC_002512.2 + 4585 0.69 0.941162
Target:  5'- cGGCGGAG--GAGGcgGCgCCGcgGGCc -3'
miRNA:   3'- -CCGCCUCagUUCCuaUGgGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 4638 0.72 0.846885
Target:  5'- uGGCGGAGaaggagCAcGGGAgcggagGCCCCGccGGCg -3'
miRNA:   3'- -CCGCCUCa-----GU-UCCUa-----UGGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 7088 0.66 0.987672
Target:  5'- uGGUGGAGccuaUCAAGGuucgACgCCggcagcuugGUUGGCg -3'
miRNA:   3'- -CCGCCUC----AGUUCCua--UGgGG---------UAACCG- -5'
9281 3' -53.2 NC_002512.2 + 7255 0.73 0.805209
Target:  5'- cGGCGGAG-CGgcguccgucGGGAUcgggcgcgagGCCCCGggGGCc -3'
miRNA:   3'- -CCGCCUCaGU---------UCCUA----------UGGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 9080 0.72 0.862276
Target:  5'- cGGCGGgaccacgagcgGGUCGAGGAcgauCCCCAgcaGGUc -3'
miRNA:   3'- -CCGCC-----------UCAGUUCCUau--GGGGUaa-CCG- -5'
9281 3' -53.2 NC_002512.2 + 9754 0.7 0.920998
Target:  5'- cGGCGGAGcC--GGAcccgccGCCCCGcgUGGCg -3'
miRNA:   3'- -CCGCCUCaGuuCCUa-----UGGGGUa-ACCG- -5'
9281 3' -53.2 NC_002512.2 + 17404 0.67 0.985617
Target:  5'- aGGuCGGAGUCGucguaguccucgagGcGGAUGCCCUccucgcGGCg -3'
miRNA:   3'- -CC-GCCUCAGU--------------U-CCUAUGGGGuaa---CCG- -5'
9281 3' -53.2 NC_002512.2 + 18298 0.68 0.973408
Target:  5'- cGGCGGAG-CAgaaggggaugGGGAcGCCCCGcauGCg -3'
miRNA:   3'- -CCGCCUCaGU----------UCCUaUGGGGUaacCG- -5'
9281 3' -53.2 NC_002512.2 + 18919 0.67 0.978332
Target:  5'- aGGCGcGAcaCAGGGcccggacgACCUCGUUGGCc -3'
miRNA:   3'- -CCGC-CUcaGUUCCua------UGGGGUAACCG- -5'
9281 3' -53.2 NC_002512.2 + 19895 0.68 0.970663
Target:  5'- aGGCGGucgCgGAGGA-ACCCCgggaagccGUUGGCg -3'
miRNA:   3'- -CCGCCucaG-UUCCUaUGGGG--------UAACCG- -5'
9281 3' -53.2 NC_002512.2 + 25296 0.72 0.868209
Target:  5'- uGGUGGAGUCcaauccccagucGGGGUcGCCCCAccggagGGCg -3'
miRNA:   3'- -CCGCCUCAGu-----------UCCUA-UGGGGUaa----CCG- -5'
9281 3' -53.2 NC_002512.2 + 28081 0.67 0.980525
Target:  5'- cGGCGGAGaCGGcGGAgaggucgccGCCCCGUccGCg -3'
miRNA:   3'- -CCGCCUCaGUU-CCUa--------UGGGGUAacCG- -5'
9281 3' -53.2 NC_002512.2 + 32206 0.66 0.989092
Target:  5'- gGGCGGGuGUCcguuGAGGAgggcguccACCUCGUcgGGCc -3'
miRNA:   3'- -CCGCCU-CAG----UUCCUa-------UGGGGUAa-CCG- -5'
9281 3' -53.2 NC_002512.2 + 32280 0.67 0.984407
Target:  5'- aGGCGGcccgCAugAGGAgggcgGCCUCGUagUGGCa -3'
miRNA:   3'- -CCGCCuca-GU--UCCUa----UGGGGUA--ACCG- -5'
9281 3' -53.2 NC_002512.2 + 33812 0.71 0.909522
Target:  5'- aGCGcGAG-CAGGGcgaagGCCCCggUGGCc -3'
miRNA:   3'- cCGC-CUCaGUUCCua---UGGGGuaACCG- -5'
9281 3' -53.2 NC_002512.2 + 34073 0.66 0.991548
Target:  5'- cGGCGGcGUCGAcGAUGuCCCCGca-GCg -3'
miRNA:   3'- -CCGCCuCAGUUcCUAU-GGGGUaacCG- -5'
9281 3' -53.2 NC_002512.2 + 34357 0.68 0.964575
Target:  5'- gGGCGGAG--GAGG-UACCCCgagaaguaGUaGGCg -3'
miRNA:   3'- -CCGCCUCagUUCCuAUGGGG--------UAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 37215 0.66 0.989092
Target:  5'- aGCGGuGUC-GGGAaaACUCCGUUGcGCc -3'
miRNA:   3'- cCGCCuCAGuUCCUa-UGGGGUAAC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.