miRNA display CGI


Results 1 - 20 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9281 3' -53.2 NC_002512.2 + 229524 0.67 0.980525
Target:  5'- cGGCGGAGaaAAGGAgaACgCCGgggagccgGGCg -3'
miRNA:   3'- -CCGCCUCagUUCCUa-UGgGGUaa------CCG- -5'
9281 3' -53.2 NC_002512.2 + 229500 0.66 0.989092
Target:  5'- cGGCGGGGggaGAGGAgGCCggCAggaGGCg -3'
miRNA:   3'- -CCGCCUCag-UUCCUaUGGg-GUaa-CCG- -5'
9281 3' -53.2 NC_002512.2 + 227960 0.68 0.961221
Target:  5'- cGCGGGGgagccggaGAGGAggGCCCCGgcgccgagGGCc -3'
miRNA:   3'- cCGCCUCag------UUCCUa-UGGGGUaa------CCG- -5'
9281 3' -53.2 NC_002512.2 + 226852 0.71 0.890591
Target:  5'- aGGCGGAGcaggccgcCAGGGAgGCCCgGgaGGCc -3'
miRNA:   3'- -CCGCCUCa-------GUUCCUaUGGGgUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 223043 0.7 0.926388
Target:  5'- cGGCGaGGUCcGGGAggUGCCCC--UGGUc -3'
miRNA:   3'- -CCGCcUCAGuUCCU--AUGGGGuaACCG- -5'
9281 3' -53.2 NC_002512.2 + 221082 0.69 0.945624
Target:  5'- cGGCGGAacggcGUgGGGGAcGCCCUcc-GGCg -3'
miRNA:   3'- -CCGCCU-----CAgUUCCUaUGGGGuaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 220987 0.66 0.991548
Target:  5'- uGGCcaggaGGGUCGAG--UGCCCCAacGGCu -3'
miRNA:   3'- -CCGc----CUCAGUUCcuAUGGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 219830 0.68 0.967721
Target:  5'- aGGgGGucGGUCGGGGGguccGgCCCGggGGCg -3'
miRNA:   3'- -CCgCC--UCAGUUCCUa---UgGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 219492 0.68 0.961221
Target:  5'- gGGCGG-GUCAgacgAGGAUGCUggCCGgcguucGGCa -3'
miRNA:   3'- -CCGCCuCAGU----UCCUAUGG--GGUaa----CCG- -5'
9281 3' -53.2 NC_002512.2 + 218657 0.66 0.987672
Target:  5'- cGGaCGGAGgc--GGAUACCCg---GGCa -3'
miRNA:   3'- -CC-GCCUCaguuCCUAUGGGguaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 213350 0.69 0.945624
Target:  5'- -cCGGAGcCAGGGGgacGCCCgCGcUGGCg -3'
miRNA:   3'- ccGCCUCaGUUCCUa--UGGG-GUaACCG- -5'
9281 3' -53.2 NC_002512.2 + 211554 0.69 0.949858
Target:  5'- cGGCGuGuGcCGcGGGAUGuCCCCAUgcggGGCg -3'
miRNA:   3'- -CCGC-CuCaGU-UCCUAU-GGGGUAa---CCG- -5'
9281 3' -53.2 NC_002512.2 + 207006 0.68 0.964575
Target:  5'- cGCGGGGUCAGcauGGUGgCCCAgUUGuGCa -3'
miRNA:   3'- cCGCCUCAGUUc--CUAUgGGGU-AAC-CG- -5'
9281 3' -53.2 NC_002512.2 + 202520 0.68 0.973408
Target:  5'- aGGCGGAGgcggcggCGGGGGcggacgACCCag--GGCu -3'
miRNA:   3'- -CCGCCUCa------GUUCCUa-----UGGGguaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 201436 0.66 0.98868
Target:  5'- cGGCGGGucGUCGcgaucucggccucgAGGugguCCCCGUcGGCc -3'
miRNA:   3'- -CCGCCU--CAGU--------------UCCuau-GGGGUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 201082 0.67 0.985449
Target:  5'- uGCGGGGUCuGGGAcagcaUGCCCacgaagaugaGGCa -3'
miRNA:   3'- cCGCCUCAGuUCCU-----AUGGGguaa------CCG- -5'
9281 3' -53.2 NC_002512.2 + 200101 0.69 0.953866
Target:  5'- cGCGGGGUCGccGGGGUACUUCA---GCa -3'
miRNA:   3'- cCGCCUCAGU--UCCUAUGGGGUaacCG- -5'
9281 3' -53.2 NC_002512.2 + 191316 0.71 0.876859
Target:  5'- cGGCGGGGUCAAGG-UGgUCUgc-GGCg -3'
miRNA:   3'- -CCGCCUCAGUUCCuAUgGGGuaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 187685 0.68 0.970663
Target:  5'- gGGCGGAGgCAccGGGAacccgaACCCCcgacccUGGCu -3'
miRNA:   3'- -CCGCCUCaGU--UCCUa-----UGGGGua----ACCG- -5'
9281 3' -53.2 NC_002512.2 + 187268 0.67 0.986113
Target:  5'- uGGCGGAcGUCGccucgaaGUGCCCCcg-GGCu -3'
miRNA:   3'- -CCGCCU-CAGUucc----UAUGGGGuaaCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.