Results 21 - 40 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 185876 | 0.66 | 0.992599 |
Target: 5'- -cCGGAG-CAAGGucACCCCcucaacgugUGGCg -3' miRNA: 3'- ccGCCUCaGUUCCuaUGGGGua-------ACCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 185857 | 0.71 | 0.903438 |
Target: 5'- aGCGGuacGUCGAGGAgggcGCCUCGggccgcUGGCa -3' miRNA: 3'- cCGCCu--CAGUUCCUa---UGGGGUa-----ACCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 185515 | 0.66 | 0.987371 |
Target: 5'- cGCGGGGgccugccgcucuUCGAGGGgguggccuaccgGCCCCGcggcgUGGCc -3' miRNA: 3'- cCGCCUC------------AGUUCCUa-----------UGGGGUa----ACCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 182957 | 0.68 | 0.967721 |
Target: 5'- cGGUGGAugaaGUCGAaguGGuagGCCCCGgucGGCa -3' miRNA: 3'- -CCGCCU----CAGUU---CCua-UGGGGUaa-CCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 181999 | 0.67 | 0.986113 |
Target: 5'- uGGCGGAcGUCcucGGGGUcagGCCCa---GGCg -3' miRNA: 3'- -CCGCCU-CAGu--UCCUA---UGGGguaaCCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 180770 | 0.66 | 0.990381 |
Target: 5'- uGGCGuGcAGcCGGGcGAUGCCCCg--GGUg -3' miRNA: 3'- -CCGC-C-UCaGUUC-CUAUGGGGuaaCCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 177274 | 0.67 | 0.978332 |
Target: 5'- --gGGAGUcCAGGGAcuugGCCagGUUGGCg -3' miRNA: 3'- ccgCCUCA-GUUCCUa---UGGggUAACCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 177175 | 0.66 | 0.991548 |
Target: 5'- gGGCGGgaacgGGUCAGuuaucuGAUAUCCCucaaggUGGCu -3' miRNA: 3'- -CCGCC-----UCAGUUc-----CUAUGGGGua----ACCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 175805 | 0.66 | 0.992599 |
Target: 5'- uGGCGGcGUCccGGcgGCUCCGcucguccgUGGCg -3' miRNA: 3'- -CCGCCuCAGuuCCuaUGGGGUa-------ACCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 167737 | 0.66 | 0.987672 |
Target: 5'- aGCGGGG-CGAGGAgcUGCCgggCGUcGGCg -3' miRNA: 3'- cCGCCUCaGUUCCU--AUGGg--GUAaCCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 160946 | 0.71 | 0.909522 |
Target: 5'- uGGgGGGGUCAcgagggGGGAUcCCCCcgaGGCc -3' miRNA: 3'- -CCgCCUCAGU------UCCUAuGGGGuaaCCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 160729 | 0.66 | 0.991548 |
Target: 5'- cGGgGGGGauuUCGGGGGgaacggcgccgGCCCCg--GGCa -3' miRNA: 3'- -CCgCCUC---AGUUCCUa----------UGGGGuaaCCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 159359 | 0.67 | 0.980525 |
Target: 5'- cGGCgucGGGGUCGGGGcg-UCCCAUUcGCg -3' miRNA: 3'- -CCG---CCUCAGUUCCuauGGGGUAAcCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 158995 | 0.69 | 0.948191 |
Target: 5'- gGGCGGAGgc--GGcgGCCCCGgcguccgcgccgGGCg -3' miRNA: 3'- -CCGCCUCaguuCCuaUGGGGUaa----------CCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 157037 | 0.69 | 0.957653 |
Target: 5'- cGGCccGGAG-CGAGGA--CCCCGgcaaGGCg -3' miRNA: 3'- -CCG--CCUCaGUUCCUauGGGGUaa--CCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 156520 | 0.66 | 0.991548 |
Target: 5'- cGGCGGGGcgCGGGGG---UCCGgcGGCg -3' miRNA: 3'- -CCGCCUCa-GUUCCUaugGGGUaaCCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 154032 | 0.77 | 0.601078 |
Target: 5'- aGCuacGUCAucGGAUACCCCAUUGGCu -3' miRNA: 3'- cCGccuCAGUu-CCUAUGGGGUAACCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 153803 | 0.73 | 0.796385 |
Target: 5'- cGGUcaGGAGaguuccguUUAcGGAUAUCCCAUUGGCu -3' miRNA: 3'- -CCG--CCUC--------AGUuCCUAUGGGGUAACCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 153640 | 0.69 | 0.953866 |
Target: 5'- cGGCGGAcGggagCGGGGGcacgcuccucACCCUcgUGGCg -3' miRNA: 3'- -CCGCCU-Ca---GUUCCUa---------UGGGGuaACCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 152476 | 0.71 | 0.911891 |
Target: 5'- gGGCGGGuGUCGAGGuuagGCgCCAUUuuguguuucgcgcugGGCa -3' miRNA: 3'- -CCGCCU-CAGUUCCua--UGgGGUAA---------------CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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