miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9281 3' -53.2 NC_002512.2 + 75814 1.15 0.003678
Target:  5'- gGGCGGAGUCAAGGAUACCCCAUUGGCg -3'
miRNA:   3'- -CCGCCUCAGUUCCUAUGGGGUAACCG- -5'
9281 3' -53.2 NC_002512.2 + 130852 0.67 0.978332
Target:  5'- cGGCGGucGGgCGAGGc--CCCCAccgGGCg -3'
miRNA:   3'- -CCGCC--UCaGUUCCuauGGGGUaa-CCG- -5'
9281 3' -53.2 NC_002512.2 + 118389 0.67 0.978332
Target:  5'- cGGCGGAcGUCc-GGAcuCUCCGUcuacUGGCa -3'
miRNA:   3'- -CCGCCU-CAGuuCCUauGGGGUA----ACCG- -5'
9281 3' -53.2 NC_002512.2 + 153640 0.69 0.953866
Target:  5'- cGGCGGAcGggagCGGGGGcacgcuccucACCCUcgUGGCg -3'
miRNA:   3'- -CCGCCU-Ca---GUUCCUa---------UGGGGuaACCG- -5'
9281 3' -53.2 NC_002512.2 + 9754 0.7 0.920998
Target:  5'- cGGCGGAGcC--GGAcccgccGCCCCGcgUGGCg -3'
miRNA:   3'- -CCGCCUCaGuuCCUa-----UGGGGUa-ACCG- -5'
9281 3' -53.2 NC_002512.2 + 57326 0.67 0.984407
Target:  5'- cGCGGAGgaacgucacgCAGGGGgagcugGCCUgGUUGGg -3'
miRNA:   3'- cCGCCUCa---------GUUCCUa-----UGGGgUAACCg -5'
9281 3' -53.2 NC_002512.2 + 133646 0.67 0.980734
Target:  5'- uGGCGGAGUCcGGGGcggucGCCgCCGccgccgcggccgccgUGGCc -3'
miRNA:   3'- -CCGCCUCAGuUCCUa----UGG-GGUa--------------ACCG- -5'
9281 3' -53.2 NC_002512.2 + 25296 0.72 0.868209
Target:  5'- uGGUGGAGUCcaauccccagucGGGGUcGCCCCAccggagGGCg -3'
miRNA:   3'- -CCGCCUCAGu-----------UCCUA-UGGGGUaa----CCG- -5'
9281 3' -53.2 NC_002512.2 + 19895 0.68 0.970663
Target:  5'- aGGCGGucgCgGAGGA-ACCCCgggaagccGUUGGCg -3'
miRNA:   3'- -CCGCCucaG-UUCCUaUGGGG--------UAACCG- -5'
9281 3' -53.2 NC_002512.2 + 121227 0.68 0.964575
Target:  5'- cGGCGGGGaguaCAuguGGAccGCCCCGUgGGUc -3'
miRNA:   3'- -CCGCCUCa---GUu--CCUa-UGGGGUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 4638 0.72 0.846885
Target:  5'- uGGCGGAGaaggagCAcGGGAgcggagGCCCCGccGGCg -3'
miRNA:   3'- -CCGCCUCa-----GU-UCCUa-----UGGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 136185 0.73 0.821549
Target:  5'- cGGCGGGGUCGccGGGAUcgcgucgACgCCGgcGGCc -3'
miRNA:   3'- -CCGCCUCAGU--UCCUA-------UGgGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 17404 0.67 0.985617
Target:  5'- aGGuCGGAGUCGucguaguccucgagGcGGAUGCCCUccucgcGGCg -3'
miRNA:   3'- -CC-GCCUCAGU--------------U-CCUAUGGGGuaa---CCG- -5'
9281 3' -53.2 NC_002512.2 + 104843 0.67 0.984407
Target:  5'- cGGCuGGAGcggCGGGGAgggACCUCGcgcagcgGGCg -3'
miRNA:   3'- -CCG-CCUCa--GUUCCUa--UGGGGUaa-----CCG- -5'
9281 3' -53.2 NC_002512.2 + 18919 0.67 0.978332
Target:  5'- aGGCGcGAcaCAGGGcccggacgACCUCGUUGGCc -3'
miRNA:   3'- -CCGC-CUcaGUUCCua------UGGGGUAACCG- -5'
9281 3' -53.2 NC_002512.2 + 108427 0.7 0.936469
Target:  5'- cGGCGGcGGgcgCGGGGcggACCCCucagGGCu -3'
miRNA:   3'- -CCGCC-UCa--GUUCCua-UGGGGuaa-CCG- -5'
9281 3' -53.2 NC_002512.2 + 116895 0.7 0.926388
Target:  5'- cGGCGGGGcCGGGGcggGCUCCucggacGGCg -3'
miRNA:   3'- -CCGCCUCaGUUCCua-UGGGGuaa---CCG- -5'
9281 3' -53.2 NC_002512.2 + 7255 0.73 0.805209
Target:  5'- cGGCGGAG-CGgcguccgucGGGAUcgggcgcgagGCCCCGggGGCc -3'
miRNA:   3'- -CCGCCUCaGU---------UCCUA----------UGGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 103481 0.69 0.957653
Target:  5'- aGGCGGcGUCGAcGGcgcccgggGCCCCg--GGCg -3'
miRNA:   3'- -CCGCCuCAGUU-CCua------UGGGGuaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 18298 0.68 0.973408
Target:  5'- cGGCGGAG-CAgaaggggaugGGGAcGCCCCGcauGCg -3'
miRNA:   3'- -CCGCCUCaGU----------UCCUaUGGGGUaacCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.