Results 21 - 40 of 121 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 75814 | 1.15 | 0.003678 |
Target: 5'- gGGCGGAGUCAAGGAUACCCCAUUGGCg -3' miRNA: 3'- -CCGCCUCAGUUCCUAUGGGGUAACCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 130852 | 0.67 | 0.978332 |
Target: 5'- cGGCGGucGGgCGAGGc--CCCCAccgGGCg -3' miRNA: 3'- -CCGCC--UCaGUUCCuauGGGGUaa-CCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 118389 | 0.67 | 0.978332 |
Target: 5'- cGGCGGAcGUCc-GGAcuCUCCGUcuacUGGCa -3' miRNA: 3'- -CCGCCU-CAGuuCCUauGGGGUA----ACCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 153640 | 0.69 | 0.953866 |
Target: 5'- cGGCGGAcGggagCGGGGGcacgcuccucACCCUcgUGGCg -3' miRNA: 3'- -CCGCCU-Ca---GUUCCUa---------UGGGGuaACCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 9754 | 0.7 | 0.920998 |
Target: 5'- cGGCGGAGcC--GGAcccgccGCCCCGcgUGGCg -3' miRNA: 3'- -CCGCCUCaGuuCCUa-----UGGGGUa-ACCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 57326 | 0.67 | 0.984407 |
Target: 5'- cGCGGAGgaacgucacgCAGGGGgagcugGCCUgGUUGGg -3' miRNA: 3'- cCGCCUCa---------GUUCCUa-----UGGGgUAACCg -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 133646 | 0.67 | 0.980734 |
Target: 5'- uGGCGGAGUCcGGGGcggucGCCgCCGccgccgcggccgccgUGGCc -3' miRNA: 3'- -CCGCCUCAGuUCCUa----UGG-GGUa--------------ACCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 25296 | 0.72 | 0.868209 |
Target: 5'- uGGUGGAGUCcaauccccagucGGGGUcGCCCCAccggagGGCg -3' miRNA: 3'- -CCGCCUCAGu-----------UCCUA-UGGGGUaa----CCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 19895 | 0.68 | 0.970663 |
Target: 5'- aGGCGGucgCgGAGGA-ACCCCgggaagccGUUGGCg -3' miRNA: 3'- -CCGCCucaG-UUCCUaUGGGG--------UAACCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 121227 | 0.68 | 0.964575 |
Target: 5'- cGGCGGGGaguaCAuguGGAccGCCCCGUgGGUc -3' miRNA: 3'- -CCGCCUCa---GUu--CCUa-UGGGGUAaCCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 4638 | 0.72 | 0.846885 |
Target: 5'- uGGCGGAGaaggagCAcGGGAgcggagGCCCCGccGGCg -3' miRNA: 3'- -CCGCCUCa-----GU-UCCUa-----UGGGGUaaCCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 136185 | 0.73 | 0.821549 |
Target: 5'- cGGCGGGGUCGccGGGAUcgcgucgACgCCGgcGGCc -3' miRNA: 3'- -CCGCCUCAGU--UCCUA-------UGgGGUaaCCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 17404 | 0.67 | 0.985617 |
Target: 5'- aGGuCGGAGUCGucguaguccucgagGcGGAUGCCCUccucgcGGCg -3' miRNA: 3'- -CC-GCCUCAGU--------------U-CCUAUGGGGuaa---CCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 104843 | 0.67 | 0.984407 |
Target: 5'- cGGCuGGAGcggCGGGGAgggACCUCGcgcagcgGGCg -3' miRNA: 3'- -CCG-CCUCa--GUUCCUa--UGGGGUaa-----CCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 18919 | 0.67 | 0.978332 |
Target: 5'- aGGCGcGAcaCAGGGcccggacgACCUCGUUGGCc -3' miRNA: 3'- -CCGC-CUcaGUUCCua------UGGGGUAACCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 108427 | 0.7 | 0.936469 |
Target: 5'- cGGCGGcGGgcgCGGGGcggACCCCucagGGCu -3' miRNA: 3'- -CCGCC-UCa--GUUCCua-UGGGGuaa-CCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 116895 | 0.7 | 0.926388 |
Target: 5'- cGGCGGGGcCGGGGcggGCUCCucggacGGCg -3' miRNA: 3'- -CCGCCUCaGUUCCua-UGGGGuaa---CCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 7255 | 0.73 | 0.805209 |
Target: 5'- cGGCGGAG-CGgcguccgucGGGAUcgggcgcgagGCCCCGggGGCc -3' miRNA: 3'- -CCGCCUCaGU---------UCCUA----------UGGGGUaaCCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 103481 | 0.69 | 0.957653 |
Target: 5'- aGGCGGcGUCGAcGGcgcccgggGCCCCg--GGCg -3' miRNA: 3'- -CCGCCuCAGUU-CCua------UGGGGuaaCCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 18298 | 0.68 | 0.973408 |
Target: 5'- cGGCGGAG-CAgaaggggaugGGGAcGCCCCGcauGCg -3' miRNA: 3'- -CCGCCUCaGU----------UCCUaUGGGGUaacCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home