Results 21 - 40 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 121227 | 0.68 | 0.964575 |
Target: 5'- cGGCGGGGaguaCAuguGGAccGCCCCGUgGGUc -3' miRNA: 3'- -CCGCCUCa---GUu--CCUa-UGGGGUAaCCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 104790 | 0.69 | 0.949858 |
Target: 5'- uGGCGGGGUCcgcgcgcggcGGGuuGUACUCCAg-GGCg -3' miRNA: 3'- -CCGCCUCAGu---------UCC--UAUGGGGUaaCCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 134162 | 0.71 | 0.897127 |
Target: 5'- cGGCGGGGaCGGGGAgccgucuuCCCCucccGGCc -3' miRNA: 3'- -CCGCCUCaGUUCCUau------GGGGuaa-CCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 125619 | 0.74 | 0.740702 |
Target: 5'- aGGCGuGGGUCAGGuauucGGUcACCCgGUUGGCc -3' miRNA: 3'- -CCGC-CUCAGUUC-----CUA-UGGGgUAACCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 82429 | 0.67 | 0.982547 |
Target: 5'- cGGCGGAGgggaCGAGGggGCgucggucccgcuCCCGaaGGCg -3' miRNA: 3'- -CCGCCUCa---GUUCCuaUG------------GGGUaaCCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 127846 | 0.68 | 0.975962 |
Target: 5'- -cCGGAGUCc-GGAgcgggAUCCCGUgGGCg -3' miRNA: 3'- ccGCCUCAGuuCCUa----UGGGGUAaCCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 127925 | 0.69 | 0.941162 |
Target: 5'- gGGCGGA-UCGguAGGGUACCCgA--GGCc -3' miRNA: 3'- -CCGCCUcAGU--UCCUAUGGGgUaaCCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 95281 | 0.76 | 0.681697 |
Target: 5'- cGGCGGGGUC-GGGu--UCCCGUcGGCg -3' miRNA: 3'- -CCGCCUCAGuUCCuauGGGGUAaCCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 72905 | 0.68 | 0.975962 |
Target: 5'- cGGCGGccgaAGUUGcccAGGAUGCCgaCGUcGGCg -3' miRNA: 3'- -CCGCC----UCAGU---UCCUAUGGg-GUAaCCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 76032 | 1 | 0.034406 |
Target: 5'- gGGUGGAGUUGAGGGUAUCCCAUUGGCg -3' miRNA: 3'- -CCGCCUCAGUUCCUAUGGGGUAACCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 91182 | 0.69 | 0.945624 |
Target: 5'- uGCGGgauccgGGUCAGGGAgACCgCCAcccggGGCa -3' miRNA: 3'- cCGCC------UCAGUUCCUaUGG-GGUaa---CCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 34357 | 0.68 | 0.964575 |
Target: 5'- gGGCGGAG--GAGG-UACCCCgagaaguaGUaGGCg -3' miRNA: 3'- -CCGCCUCagUUCCuAUGGGG--------UAaCCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 80824 | 0.7 | 0.936469 |
Target: 5'- -uCGGcGUCGGcGGAgggGCCCCGUaGGCg -3' miRNA: 3'- ccGCCuCAGUU-CCUa--UGGGGUAaCCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 33812 | 0.71 | 0.909522 |
Target: 5'- aGCGcGAG-CAGGGcgaagGCCCCggUGGCc -3' miRNA: 3'- cCGC-CUCaGUUCCua---UGGGGuaACCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 9080 | 0.72 | 0.862276 |
Target: 5'- cGGCGGgaccacgagcgGGUCGAGGAcgauCCCCAgcaGGUc -3' miRNA: 3'- -CCGCC-----------UCAGUUCCUau--GGGGUaa-CCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 7255 | 0.73 | 0.805209 |
Target: 5'- cGGCGGAG-CGgcguccgucGGGAUcgggcgcgagGCCCCGggGGCc -3' miRNA: 3'- -CCGCCUCaGU---------UCCUA----------UGGGGUaaCCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 105168 | 0.67 | 0.984407 |
Target: 5'- cGGCGGGGaacAGGugcacgcGCCCCAggacGGCg -3' miRNA: 3'- -CCGCCUCaguUCCua-----UGGGGUaa--CCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 32280 | 0.67 | 0.984407 |
Target: 5'- aGGCGGcccgCAugAGGAgggcgGCCUCGUagUGGCa -3' miRNA: 3'- -CCGCCuca-GU--UCCUa----UGGGGUA--ACCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 28081 | 0.67 | 0.980525 |
Target: 5'- cGGCGGAGaCGGcGGAgaggucgccGCCCCGUccGCg -3' miRNA: 3'- -CCGCCUCaGUU-CCUa--------UGGGGUAacCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 18919 | 0.67 | 0.978332 |
Target: 5'- aGGCGcGAcaCAGGGcccggacgACCUCGUUGGCc -3' miRNA: 3'- -CCGC-CUcaGUUCCua------UGGGGUAACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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