miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9281 3' -53.2 NC_002512.2 + 75814 1.15 0.003678
Target:  5'- gGGCGGAGUCAAGGAUACCCCAUUGGCg -3'
miRNA:   3'- -CCGCCUCAGUUCCUAUGGGGUAACCG- -5'
9281 3' -53.2 NC_002512.2 + 127925 0.69 0.941162
Target:  5'- gGGCGGA-UCGguAGGGUACCCgA--GGCc -3'
miRNA:   3'- -CCGCCUcAGU--UCCUAUGGGgUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 104790 0.69 0.949858
Target:  5'- uGGCGGGGUCcgcgcgcggcGGGuuGUACUCCAg-GGCg -3'
miRNA:   3'- -CCGCCUCAGu---------UCC--UAUGGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 185876 0.66 0.992599
Target:  5'- -cCGGAG-CAAGGucACCCCcucaacgugUGGCg -3'
miRNA:   3'- ccGCCUCaGUUCCuaUGGGGua-------ACCG- -5'
9281 3' -53.2 NC_002512.2 + 7255 0.73 0.805209
Target:  5'- cGGCGGAG-CGgcguccgucGGGAUcgggcgcgagGCCCCGggGGCc -3'
miRNA:   3'- -CCGCCUCaGU---------UCCUA----------UGGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 136185 0.73 0.821549
Target:  5'- cGGCGGGGUCGccGGGAUcgcgucgACgCCGgcGGCc -3'
miRNA:   3'- -CCGCCUCAGU--UCCUA-------UGgGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 9080 0.72 0.862276
Target:  5'- cGGCGGgaccacgagcgGGUCGAGGAcgauCCCCAgcaGGUc -3'
miRNA:   3'- -CCGCC-----------UCAGUUCCUau--GGGGUaa-CCG- -5'
9281 3' -53.2 NC_002512.2 + 25296 0.72 0.868209
Target:  5'- uGGUGGAGUCcaauccccagucGGGGUcGCCCCAccggagGGCg -3'
miRNA:   3'- -CCGCCUCAGu-----------UCCUA-UGGGGUaa----CCG- -5'
9281 3' -53.2 NC_002512.2 + 33812 0.71 0.909522
Target:  5'- aGCGcGAG-CAGGGcgaagGCCCCggUGGCc -3'
miRNA:   3'- cCGC-CUCaGUUCCua---UGGGGuaACCG- -5'
9281 3' -53.2 NC_002512.2 + 4585 0.69 0.941162
Target:  5'- cGGCGGAG--GAGGcgGCgCCGcgGGCc -3'
miRNA:   3'- -CCGCCUCagUUCCuaUGgGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 116895 0.7 0.926388
Target:  5'- cGGCGGGGcCGGGGcggGCUCCucggacGGCg -3'
miRNA:   3'- -CCGCCUCaGUUCCua-UGGGGuaa---CCG- -5'
9281 3' -53.2 NC_002512.2 + 134162 0.71 0.897127
Target:  5'- cGGCGGGGaCGGGGAgccgucuuCCCCucccGGCc -3'
miRNA:   3'- -CCGCCUCaGUUCCUau------GGGGuaa-CCG- -5'
9281 3' -53.2 NC_002512.2 + 76032 1 0.034406
Target:  5'- gGGUGGAGUUGAGGGUAUCCCAUUGGCg -3'
miRNA:   3'- -CCGCCUCAGUUCCUAUGGGGUAACCG- -5'
9281 3' -53.2 NC_002512.2 + 80824 0.7 0.936469
Target:  5'- -uCGGcGUCGGcGGAgggGCCCCGUaGGCg -3'
miRNA:   3'- ccGCCuCAGUU-CCUa--UGGGGUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 95281 0.76 0.681697
Target:  5'- cGGCGGGGUC-GGGu--UCCCGUcGGCg -3'
miRNA:   3'- -CCGCCUCAGuUCCuauGGGGUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 191316 0.71 0.876859
Target:  5'- cGGCGGGGUCAAGG-UGgUCUgc-GGCg -3'
miRNA:   3'- -CCGCCUCAGUUCCuAUgGGGuaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 108427 0.7 0.936469
Target:  5'- cGGCGGcGGgcgCGGGGcggACCCCucagGGCu -3'
miRNA:   3'- -CCGCC-UCa--GUUCCua-UGGGGuaa-CCG- -5'
9281 3' -53.2 NC_002512.2 + 91182 0.69 0.945624
Target:  5'- uGCGGgauccgGGUCAGGGAgACCgCCAcccggGGCa -3'
miRNA:   3'- cCGCC------UCAGUUCCUaUGG-GGUaa---CCG- -5'
9281 3' -53.2 NC_002512.2 + 125619 0.74 0.740702
Target:  5'- aGGCGuGGGUCAGGuauucGGUcACCCgGUUGGCc -3'
miRNA:   3'- -CCGC-CUCAGUUC-----CUA-UGGGgUAACCG- -5'
9281 3' -53.2 NC_002512.2 + 4638 0.72 0.846885
Target:  5'- uGGCGGAGaaggagCAcGGGAgcggagGCCCCGccGGCg -3'
miRNA:   3'- -CCGCCUCa-----GU-UCCUa-----UGGGGUaaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.