miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9281 3' -53.2 NC_002512.2 + 175805 0.66 0.992599
Target:  5'- uGGCGGcGUCccGGcgGCUCCGcucguccgUGGCg -3'
miRNA:   3'- -CCGCCuCAGuuCCuaUGGGGUa-------ACCG- -5'
9281 3' -53.2 NC_002512.2 + 111832 0.66 0.987672
Target:  5'- cGCGGAGUCGAgcccgggcacGGGccacgGCCUCcUUGGUc -3'
miRNA:   3'- cCGCCUCAGUU----------CCUa----UGGGGuAACCG- -5'
9281 3' -53.2 NC_002512.2 + 7088 0.66 0.987672
Target:  5'- uGGUGGAGccuaUCAAGGuucgACgCCggcagcuugGUUGGCg -3'
miRNA:   3'- -CCGCCUC----AGUUCCua--UGgGG---------UAACCG- -5'
9281 3' -53.2 NC_002512.2 + 167737 0.66 0.987672
Target:  5'- aGCGGGG-CGAGGAgcUGCCgggCGUcGGCg -3'
miRNA:   3'- cCGCCUCaGUUCCU--AUGGg--GUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 123855 0.66 0.987672
Target:  5'- uGGCGGAG---AGGAcgccgcacCCCCGgcGGCg -3'
miRNA:   3'- -CCGCCUCaguUCCUau------GGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 108437 0.66 0.987672
Target:  5'- gGGCcgGGGGcCGGGGGgucccuCCCCGggcGGCg -3'
miRNA:   3'- -CCG--CCUCaGUUCCUau----GGGGUaa-CCG- -5'
9281 3' -53.2 NC_002512.2 + 185515 0.66 0.987371
Target:  5'- cGCGGGGgccugccgcucuUCGAGGGgguggccuaccgGCCCCGcggcgUGGCc -3'
miRNA:   3'- cCGCCUC------------AGUUCCUa-----------UGGGGUa----ACCG- -5'
9281 3' -53.2 NC_002512.2 + 106789 0.66 0.987672
Target:  5'- uGGuCGGGGUCGGGGucgACgUCGggagggGGCg -3'
miRNA:   3'- -CC-GCCUCAGUUCCua-UGgGGUaa----CCG- -5'
9281 3' -53.2 NC_002512.2 + 102520 0.66 0.987672
Target:  5'- cGCGGccGUCGGGGGUcagGCCCCc--GGUu -3'
miRNA:   3'- cCGCCu-CAGUUCCUA---UGGGGuaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 218657 0.66 0.987672
Target:  5'- cGGaCGGAGgc--GGAUACCCg---GGCa -3'
miRNA:   3'- -CC-GCCUCaguuCCUAUGGGguaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 201436 0.66 0.98868
Target:  5'- cGGCGGGucGUCGcgaucucggccucgAGGugguCCCCGUcGGCc -3'
miRNA:   3'- -CCGCCU--CAGU--------------UCCuau-GGGGUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 37215 0.66 0.989092
Target:  5'- aGCGGuGUC-GGGAaaACUCCGUUGcGCc -3'
miRNA:   3'- cCGCCuCAGuUCCUa-UGGGGUAAC-CG- -5'
9281 3' -53.2 NC_002512.2 + 132104 0.66 0.992599
Target:  5'- cGGacCGGGGcUCGAGGGccGCCCgGUaGGCc -3'
miRNA:   3'- -CC--GCCUC-AGUUCCUa-UGGGgUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 220987 0.66 0.991548
Target:  5'- uGGCcaggaGGGUCGAG--UGCCCCAacGGCu -3'
miRNA:   3'- -CCGc----CUCAGUUCcuAUGGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 160729 0.66 0.991548
Target:  5'- cGGgGGGGauuUCGGGGGgaacggcgccgGCCCCg--GGCa -3'
miRNA:   3'- -CCgCCUC---AGUUCCUa----------UGGGGuaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 156520 0.66 0.991548
Target:  5'- cGGCGGGGcgCGGGGG---UCCGgcGGCg -3'
miRNA:   3'- -CCGCCUCa-GUUCCUaugGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 180770 0.66 0.990381
Target:  5'- uGGCGuGcAGcCGGGcGAUGCCCCg--GGUg -3'
miRNA:   3'- -CCGC-C-UCaGUUC-CUAUGGGGuaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 152188 0.66 0.990381
Target:  5'- aGGacCGGGGUCcucGGAgaguggACCCCGguccUGGCc -3'
miRNA:   3'- -CC--GCCUCAGuu-CCUa-----UGGGGUa---ACCG- -5'
9281 3' -53.2 NC_002512.2 + 77192 0.66 0.989092
Target:  5'- cGCGGAcGaUCGAGGAgGCCCCccu-GCg -3'
miRNA:   3'- cCGCCU-C-AGUUCCUaUGGGGuaacCG- -5'
9281 3' -53.2 NC_002512.2 + 74829 0.66 0.989092
Target:  5'- cGGCGGAcgaacaacucgGuUCGAGGGgccUCCCGcgGGCg -3'
miRNA:   3'- -CCGCCU-----------C-AGUUCCUau-GGGGUaaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.