miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9281 3' -53.2 NC_002512.2 + 74829 0.66 0.989092
Target:  5'- cGGCGGAcgaacaacucgGuUCGAGGGgccUCCCGcgGGCg -3'
miRNA:   3'- -CCGCCU-----------C-AGUUCCUau-GGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 67665 0.66 0.988956
Target:  5'- cGCGGGcucgaccGUCGAGuGGUGCCCguugUGGUg -3'
miRNA:   3'- cCGCCU-------CAGUUC-CUAUGGGgua-ACCG- -5'
9281 3' -53.2 NC_002512.2 + 201436 0.66 0.98868
Target:  5'- cGGCGGGucGUCGcgaucucggccucgAGGugguCCCCGUcGGCc -3'
miRNA:   3'- -CCGCCU--CAGU--------------UCCuau-GGGGUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 102520 0.66 0.987672
Target:  5'- cGCGGccGUCGGGGGUcagGCCCCc--GGUu -3'
miRNA:   3'- cCGCCu-CAGUUCCUA---UGGGGuaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 218657 0.66 0.987672
Target:  5'- cGGaCGGAGgc--GGAUACCCg---GGCa -3'
miRNA:   3'- -CC-GCCUCaguuCCUAUGGGguaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 106789 0.66 0.987672
Target:  5'- uGGuCGGGGUCGGGGucgACgUCGggagggGGCg -3'
miRNA:   3'- -CC-GCCUCAGUUCCua-UGgGGUaa----CCG- -5'
9281 3' -53.2 NC_002512.2 + 109172 0.66 0.987672
Target:  5'- cGCGGGG-CcGGGAUgaagaGCCCCAggUGcGCc -3'
miRNA:   3'- cCGCCUCaGuUCCUA-----UGGGGUa-AC-CG- -5'
9281 3' -53.2 NC_002512.2 + 111832 0.66 0.987672
Target:  5'- cGCGGAGUCGAgcccgggcacGGGccacgGCCUCcUUGGUc -3'
miRNA:   3'- cCGCCUCAGUU----------CCUa----UGGGGuAACCG- -5'
9281 3' -53.2 NC_002512.2 + 7088 0.66 0.987672
Target:  5'- uGGUGGAGccuaUCAAGGuucgACgCCggcagcuugGUUGGCg -3'
miRNA:   3'- -CCGCCUC----AGUUCCua--UGgGG---------UAACCG- -5'
9281 3' -53.2 NC_002512.2 + 167737 0.66 0.987672
Target:  5'- aGCGGGG-CGAGGAgcUGCCgggCGUcGGCg -3'
miRNA:   3'- cCGCCUCaGUUCCU--AUGGg--GUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 108437 0.66 0.987672
Target:  5'- gGGCcgGGGGcCGGGGGgucccuCCCCGggcGGCg -3'
miRNA:   3'- -CCG--CCUCaGUUCCUau----GGGGUaa-CCG- -5'
9281 3' -53.2 NC_002512.2 + 123855 0.66 0.987672
Target:  5'- uGGCGGAG---AGGAcgccgcacCCCCGgcGGCg -3'
miRNA:   3'- -CCGCCUCaguUCCUau------GGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 185515 0.66 0.987371
Target:  5'- cGCGGGGgccugccgcucuUCGAGGGgguggccuaccgGCCCCGcggcgUGGCc -3'
miRNA:   3'- cCGCCUC------------AGUUCCUa-----------UGGGGUa----ACCG- -5'
9281 3' -53.2 NC_002512.2 + 187268 0.67 0.986113
Target:  5'- uGGCGGAcGUCGccucgaaGUGCCCCcg-GGCu -3'
miRNA:   3'- -CCGCCU-CAGUucc----UAUGGGGuaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 127659 0.67 0.986113
Target:  5'- cGGaCGGccGGUCGAGGGccGCUCCGgccgcGGCg -3'
miRNA:   3'- -CC-GCC--UCAGUUCCUa-UGGGGUaa---CCG- -5'
9281 3' -53.2 NC_002512.2 + 181999 0.67 0.986113
Target:  5'- uGGCGGAcGUCcucGGGGUcagGCCCa---GGCg -3'
miRNA:   3'- -CCGCCU-CAGu--UCCUA---UGGGguaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 108156 0.67 0.985949
Target:  5'- aGGaCGGAGggccucgucagcaUCAcGGucGCCCCggUGGCg -3'
miRNA:   3'- -CC-GCCUC-------------AGUuCCuaUGGGGuaACCG- -5'
9281 3' -53.2 NC_002512.2 + 17404 0.67 0.985617
Target:  5'- aGGuCGGAGUCGucguaguccucgagGcGGAUGCCCUccucgcGGCg -3'
miRNA:   3'- -CC-GCCUCAGU--------------U-CCUAUGGGGuaa---CCG- -5'
9281 3' -53.2 NC_002512.2 + 201082 0.67 0.985449
Target:  5'- uGCGGGGUCuGGGAcagcaUGCCCacgaagaugaGGCa -3'
miRNA:   3'- cCGCCUCAGuUCCU-----AUGGGguaa------CCG- -5'
9281 3' -53.2 NC_002512.2 + 87516 0.67 0.984407
Target:  5'- cGCGGAGcCGAuggcGGGUAUCuCCGUUcucGGCu -3'
miRNA:   3'- cCGCCUCaGUU----CCUAUGG-GGUAA---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.